Geobacter benzoatilyticus: JZM60_14330
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Entry
JZM60_14330 CDS
T07995
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
gbz
Geobacter benzoatilyticus
Pathway
gbz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gbz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
JZM60_14330 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gbz03400
]
JZM60_14330 (recD)
Enzymes [BR:
gbz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
JZM60_14330 (recD)
DNA repair and recombination proteins [BR:
gbz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
JZM60_14330 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
RecD_N
AAA_11
UvrD-helicase
NAT10_TcmA_helicase
SH3_13
Viral_helicase1
AAA_22
PhoH
TraI_hel_assoc_N
SLFN-g3_helicase
DEAD
nSTAND3
AAA_16
UvrD_C
NTPase_1
AAA
ResIII
Motif
Other DBs
NCBI-ProteinID:
QSV47447
UniProt:
A0ABX7Q8C0
LinkDB
All DBs
Position
complement(3087103..3088881)
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AA seq
592 aa
AA seq
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MASETSDYRDIDFRFADFLCRLARSGSDELRRAALRVSNAVGQGHICVDLAAEAGGEEES
GRVTDLLRSSGVVGNPGEFAPLVLDDTRLYLYRYWKYETELAEKIIEKAGSLYPVDGLIL
RDGIARLFGSPADGETDWQRVAAAAALHSGFTVISGGPGTGKTSTVVKIIALLLEQSGSD
GFRVALTAPTGKAAARLKDAIRGAREGLAGLTPVQDRIPDEVTTIHRLLGVIPGSNRFRY
HRGNLLPHDVVVVDEASMVALPLMARLVEAMAPKARLVLLGDRDQLASVEAGAVLGDIYD
TGDTPLYSPEFRRFVEETTGERLERDSADEPPSPLADSLVILRKNYRFGAGSGIGALSRA
INGGDGVGALALLRDGGASGVTWRETPSVEALEQALSPEVLDGYGDYLAKDDPAAVLTAF
DRFRVLCAVREGRYGVAGLNGAIERILAARGIISPNRRWYRGRPVMVTVNDYALRLFNGD
VGITLPDPENPGNLAVFFPSATEGVRKVSPLRLPHHETVFAMTVHKSQGSEFDKILMVIP
PVESPVLTRELLYTGITRARAAAGLWCGEAVFNTAVARRVERRSGLRKALAK
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atggcctctgaaaccagcgactaccgcgacatagatttccgcttcgccgatttcctctgc
cgccttgcccggagcgggagcgatgagctgcgccgggcggccctccgggtgagcaatgcc
gtcggccagggacacatctgtgtcgatctcgccgccgaggcgggaggggaagaggagagc
ggccgcgttaccgacctcctgcgctcctccggcgtggtgggaaaccccggtgagtttgct
ccgctggtccttgacgatacccggctctatctctaccgatattggaaatatgaaaccgaa
cttgccgaaaaaattatagaaaaagccggaagtttatatccggtagatggccttatccta
cgtgatgggattgcgcggctcttcggttctcccgccgatggggagaccgactggcagcgg
gtagcggcggcagcggctctgcacagcggcttcacggtcatctccggtgggccgggaacc
ggcaagacctccaccgtcgtcaagatcatcgccctgctcctggagcagtccggtagtgac
gggtttcgcgtcgccctcacggcgcccacggggaaggccgccgcgcggctcaaggatgcg
atccgcggggccagggaggggcttgccggcttgaccccggtgcaggatcggattcccgac
gaggtgacgaccatccatcggctcctgggagtgattccgggctccaaccgcttccggtac
caccgggggaacctgctcccccatgacgtggtggtggtcgatgaggcctccatggtggcg
ctccccctcatggcccgccttgtggaggcaatggcgcccaaggccaggcttgttctgctg
ggggaccgggaccagctcgcctcggtggaggccggcgccgtccttggcgacatctacgat
acgggcgatacccctctgtattcgccggagttccgtcgctttgtcgaggagaccaccggc
gagcggctggaacgggactctgctgatgaaccaccctcgccccttgccgactccctcgtc
atccttcgcaaaaactaccgttttggcgccggcagcggcattggggccctcagccgtgcc
ataaacggcggcgacggggtcggagccctggcgcttctccgcgatgggggcgcctccggc
gtgacctggcgcgagactccgtccgtcgaggcactggagcaggccctgtcgccggaggtt
cttgacggatatggcgactacctcgccaaggacgatcccgcagcggtcctgacagccttc
gaccggttccgggttctctgtgccgtgcgggagggacgatatggcgttgccggcttgaac
ggtgcaatcgagcggatactcgccgccagggggatcatctccccgaatcggcgctggtac
cgggggcggccggtcatggtgaccgtcaacgattacgctttacggcttttcaacggcgac
gtcgggatcacccttcccgaccccgagaatcccggtaacctcgccgttttctttccctcc
gcaaccgaaggggtccggaaggtgtcgcctctgcggctccctcaccatgaaacggtcttt
gccatgacggtccacaagagccaggggagcgagttcgacaagatactcatggtgattccc
cccgtcgagagcccggtgctgacccgtgaactactctacaccggcatcacccgcgcccgc
gcggcggctggactctggtgcggagaagctgtgtttaataccgctgtggcccgccgggtc
gagcgcaggtcgggtttgcggaaggctctggctaagtaa
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