Geobacter benzoatilyticus: JZM60_14335
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Entry
JZM60_14335 CDS
T07995
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
gbz
Geobacter benzoatilyticus
Pathway
gbz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gbz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
JZM60_14335 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gbz03400
]
JZM60_14335 (recB)
Enzymes [BR:
gbz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
JZM60_14335 (recB)
DNA repair and recombination proteins [BR:
gbz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
JZM60_14335 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
ResIII
Biotin_carb_C
AAA_11
Motif
Other DBs
NCBI-ProteinID:
QSV45287
LinkDB
All DBs
Position
complement(3088871..3092473)
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AA seq
1200 aa
AA seq
DB search
METYNNLTIDLSGRNLIEASAGTGKTYAIACLYLRLVVERGLKPEEILVVTFTEAATKEL
RSRIRERLREARDVFAGGATTDEFLLSMADPGRPEWPGTEEALRRLDLALRTFDCAAIST
IHGFCFRALQENAFESGSLYDTEFLADQNPLIQEIVDDFWRRTFFGAEAPLLPQALRLKW
SSEGLARFLRGKLGNPELLVVPLYGDDEVTALVRECEALYDELARLWEAKRGEIEEIIST
HKGLSRAQKTYHRDLVPGLLEGMTDYLASGNPWDLCPGFEKFTTAFILGQALKKNEPPEH
HFFDRCDRMFRLVEMRYQALRGGLYTFARERLSVLKAERAVRSYDDLLTDLYRALQGPTG
ADLAERLRSRYRAALIDEFQDTDPVQYRIFREIYRDAATPLFLIGDPKQAIYSFRGADIF
AYLEARDDVPATARFTMGQNWRSTPSMVEGVNTLFRQKRETPFVVEAIGYPEVTAAKREE
PLVLEGRDPAPLQLWFMARTPEDGAGISMGPARERIVTAVGAEIAGLLADGREGRATIDG
RGVVSEDIAVIVRSHKEAALVQEGLRGLGIPSVVQSAMSLFATDEAREICRILEAVAEPS
NETRVRAALATTILGVSGNDIARLLEDEQGWEERLEAFREYHELWQGRGFMTIFRTLLAR
EGVRERLLPLADGERRLTNVLHCGEVIHGAAVERSLGVDPLCAWFGERVNSPPPDEEYQI
RLESDEKAVRIVTVHVSKGLEYPIVFCPFTWGGVRDDGDTAVCHDGYRMVADFGSHEYGT
RRLKARNEALAENVRLLYVALTRARHRCYLVWGKFRYAETSALAYLLHHPGDSREGDITV
AVGEVMKGITDEALLERLDGLKHEGGGAIAVTVDPAPEAPRFRSGTGGSATPVCPPFGRE
IESDWRVASFTSFAARHRPEEELPDRDQPAAVTAESAEIAEEVLPAEGTIFAFPRGSRAG
IVLHAVFENLDFADAADAKVENLAAQELARHGFGDEWRGAVCAMVRNVLDAPMGKGDSAF
RLADLAPKSWRAEMEFFFPLRFVGSEQVAAVLRRWGALPEGATLAEVAARLDFAPVQGMV
RGFMDMVFQHSGKYYLIDWKSNHLGNRVDDYGRESLGREMERKLYPLQYLLYTVALNLHL
AQRVPGYRYETHFGGALYVFLRGVDPERPDYGIYRDVPPKGLIDELTSCLVALKEHHDGL
NT seq
3603 nt
NT seq
+upstream
nt +downstream
nt
atggaaacctacaacaacctcacaattgacctttcggggcgcaacctcatcgaggccagc
gccggaaccggcaagacctacgccatcgcctgcctctatctccgccttgtcgtggaaagg
gggctcaagcccgaggaaatcctcgtggttaccttcacggaggcggctaccaaggaactt
cgctcccggatccgggagcggttgcgggaggcccgcgacgtctttgccgggggagcgacc
accgatgagttcctgctgagcatggccgaccccggccgcccggaatggccgggaacggaa
gaggccctccggcgcctcgacctggcgcttcggaccttcgactgcgccgccatctccacc
atccacggcttctgcttccgggccctgcaggaaaacgccttcgagagcggctccctctac
gacacggaatttctggccgaccagaaccccctcatccaggagatcgtggacgacttctgg
cgccgtaccttcttcggcgccgaggcgccgctcctgccccaggcgctgcggctcaagtgg
tcctccgaagggcttgcccgcttcctgcgggggaagctgggcaatccggaactgctggtg
gtccccctctacggcgatgacgaggtgacggcccttgtccgggagtgcgaggccctctac
gacgagctggcccgcctgtgggaggcgaagcggggggagatcgaggagattatctccacc
cacaagggattgagccgtgctcagaaaacctatcaccgagatctggttcccggccttttg
gaggggatgacggattacttggcttccgggaatccgtgggatctctgtcctggattcgag
aagttcaccactgcctttatcctgggccaggccctgaaaaaaaacgagccgccggaacac
cattttttcgaccggtgcgaccggatgttccggctcgtggagatgcgctatcaggccctc
cggggggggctctacaccttcgccagggagcggctctctgtcctcaaggccgaacgtgcc
gtccgctcctacgacgacctcctgacggacctctaccgggcgctccaggggcccaccggt
gccgaccttgccgagcgtctccgcagccgctaccgggcggccctcatcgacgagttccag
gacaccgacccggtccagtaccggatcttcagggagatttaccgggacgcggccactcct
ctcttcctcatcggcgacccgaagcaggccatctacagcttccggggggccgatatcttc
gcctacctggaggcccgggacgacgtccccgcgacagcccgcttcaccatggggcaaaac
tggcggtcaactccatccatggtggagggggtgaacaccctgttccggcagaagcgggag
acccccttcgtggtggaggccatcggctacccagaggtgacggcggccaaacgggaggaa
cccctcgtcctcgaagggcgcgacccggcccccctccagctctggttcatggcgcggacc
cccgaggacggcgccggcatctccatggggccggcccgggaaaggatcgtgacagcggtg
ggggccgagatcgccgggctcctggccgacggccgggaggggcgggcgaccatcgacggc
aggggggtggtgtccgaggatatcgccgtcattgtccggagccacaaggaggctgccctt
gtccaggaagggctgcgggggctcggcatcccgtcggtggtccagagcgccatgagcctc
tttgccacggacgaggcccgggaaatctgccggatactggaggcggtcgccgaaccatcc
aacgagaccagggtgcgggctgccctcgccacaaccatcctcggcgtgtcgggcaacgac
atcgcccgcctcctggaggacgagcagggatgggaggagcgccttgaagcgttccgggag
taccacgaactctggcagggacggggcttcatgaccatattccgaacccttctggcccgg
gagggggtgcgggagcggctccttcccctcgcggacggggagcggcggctcaccaacgtc
ctccactgcggcgaggtgatccacggtgccgccgtggagaggagcctcggcgtggacccc
ctttgcgcctggttcggcgagcgggtgaattcgccccctcccgacgaggagtaccagatc
aggctcgaatcggacgaaaaggcggtgcggatcgtgaccgtgcacgtgagcaaggggctc
gaataccccatcgtcttttgccccttcacctggggaggcgtcagggatgacggcgacacg
gccgtctgccatgacggctaccgtatggtggccgatttcggctcccatgagtacggaacg
cgccgcctgaaggcgcgcaacgaggccctggccgaaaacgtccggctcctctatgtggct
cttacccgggccaggcaccgctgctacctggtctgggggaagttccgctacgcggagaca
tcggccctggcctatctcctccaccatcccggcgacagccgtgaaggcgacattacggtg
gcagtcggcgaggtgatgaagggtatcaccgacgaggcgctcctggagcgtcttgacggc
ctgaagcatgaggggggaggggccattgccgtcaccgtggaccctgcgcccgaagcccca
cgcttccggtccggaacggggggctcggcaactcccgtctgcccccccttcggcagagag
atcgagagcgactggcgggtggcgagcttcacctcctttgcggcccgtcatcgtcccgag
gaggaacttcccgaccgggaccagcccgccgccgtcactgccgagtccgcagagatcgcc
gaggaggtcctgccggcagagggaaccatcttcgccttccccaggggatcccgggcgggg
atcgtcctccatgccgttttcgagaacctcgattttgccgatgccgctgatgccaaagtg
gaaaaccttgcggcccaggaactggcgcgccacggtttcggcgatgagtggcgcggggcg
gtgtgtgccatggttcgcaacgtcctggatgcccccatgggcaaaggggatagtgctttc
cggttggccgacttggcgccgaagagctggcgtgcggagatggaattcttcttcccgctc
cggttcgtgggctccgaacaggtggcggcggtgctgcgcagatggggtgctcttcccgaa
ggtgccactcttgctgaagtggccgcccggcttgatttcgctccagtgcaggggatggtg
cgcggcttcatggatatggtgttccagcatagtgggaaatactatttgatcgactggaag
tcgaaccatctcggcaaccgggtcgacgattacggccgcgagagcctgggccgggagatg
gagcgcaagctctatccgctccagtacctactctacacggtggccctcaacctccacctg
gcgcagcgggttcccggataccggtacgaaacccactttggcggtgccctgtatgtcttt
ctccggggggtggaccccgagcgtcccgactacggcatctatcgtgatgtcccccccaag
gggctcatcgatgagctgacctcctgcctcgtggcactgaaggagcaccatgatggcctc
tga
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