Gallionella capsiferriformans: Galf_0189
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Entry
Galf_0189 CDS
T01295
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
gca
Gallionella capsiferriformans
Pathway
gca03420
Nucleotide excision repair
gca03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Galf_0189
03430 Mismatch repair
Galf_0189
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gca03400
]
Galf_0189
Enzymes [BR:
gca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Galf_0189
DNA repair and recombination proteins [BR:
gca03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Galf_0189
MMR (mismatch excision repair)
Other MMR factors
Galf_0189
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_12
Viral_helicase1
AAA_30
AAA_11
DUF3553
Motif
Other DBs
NCBI-ProteinID:
ADL54234
UniProt:
D9SIV8
LinkDB
All DBs
Position
complement(231265..233436)
Genome browser
AA seq
723 aa
AA seq
DB search
MSAPLWDNPPMNTTLLSGLNPPQLQAVTLPRQSALILAGAGSGKTRVLTTRIAYLISTGA
VSPHGILAVTFTNKAAKEMVTRLSAMLPINTRGMWIGTFHGLCNRLLRAHYREAALPQTF
QILDSGDQLSAIKRIMKALEIDDEKYPPREMQNFISGSKEQGLRAHDVEAFDPYTRRKVD
VYAEYDAQCQREGVVDFSELLLRCFELLSRNESLRTHYQERFHHILVDEFQDTNPLQYQW
LKLLAGQHNALFAVGDDDQSIYAFRGANVGNMKDLLRDFKVEAVIKLEQNYRSHGNILDA
ANALISNNRNRLGKNLWTSEQGGEKLRVYEAPTDVEEANFIVGEIRQLKTEGLKLTEMAL
LYRSNAQSRVLEHALVSAGLSYRVYGGLRFFERQEIKHALAYLRLMQNTDDDNALLRIIN
YPTRGIGARSIEQIQDSAKMHGTTLWDAAARAGGKVSAFVGLIEAMRSATSALPLPEIME
HVLVHSGLIEHYQSEKGAKKREAEERLENLKELVTAATLFVHENEDDSLTSFLTHASLEA
GEHQAGDQDDALHLMTVHAAKGLEFNAVFITGLEENLFPHQNSQRVDGGLDEERRLMYVA
ITRARRRLYMSFAQRRMLNGQVSYGAPSSFLKELPEDLLQWLSAREAPRNPFASFGYSAP
AAPVQHSVSSTGWRTGQRVMHLKFGEGVITGVEGSGTDGRVQVNFKHAGSKWLALEYAKL
TAL
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcgccactgtgggataatccgcccatgaatacgacacttttatccggcctcaat
ccgccccaactgcaagccgtaacgctaccccgccagtccgcgctcattctggccggtgcc
ggcagtggcaagacccgcgtactgaccacgcgcatcgcctacctcatcagtaccggtgct
gtgagtccgcacggcatactggcggtgaccttcaccaacaaggccgcaaaggaaatggtg
acccgcctgtcggcgatgctgcccatcaatacgcgcggcatgtggatcggtacgtttcac
ggactgtgcaatcgattactgcgcgcgcattacagagaggcggccctgccgcagaccttc
cagattctcgactcaggtgatcagctctcggcgatcaagcgcatcatgaaagcgctggaa
attgatgatgaaaaatatcctccgcgcgagatgcaaaatttcatcagcggcagcaaagag
cagggactgcgcgcgcatgatgttgaggcctttgatccctatacacggcgcaaggtcgat
gtgtacgccgaatacgatgcgcagtgtcaacgtgaaggcgtggtagatttttccgaattg
ctgctgcgctgtttcgaattgctctcccgcaatgaaagtctgcgcacccactatcaggag
cgcttccaccacattctagtggacgaatttcaggataccaatccgctgcaataccaatgg
ctcaagcttttagcggggcagcacaatgccttatttgccgtgggcgacgacgatcagtcc
atctatgcgtttcgcggcgcgaatgtcggcaacatgaaagacctgttgcgggatttcaag
gtcgaagcggtcatcaagctggagcaaaactaccgctcccacggcaacatactcgatgcg
gccaacgcgctgatttccaataaccgcaatcgcctgggcaaaaacctgtggacgtctgaa
cagggcggcgaaaagctgcgcgtctatgaagcgccgaccgatgtggaggaagccaacttc
atcgtaggcgaaatcagacagctcaaaacagaaggtctgaaactcactgagatggcactg
ttgtatcgctccaacgcgcaatcgcgtgtgctcgaacacgcgctggtctcagccggattg
tcgtaccgggtctatggcggcctgcgctttttcgaacgacaggaaatcaaacacgccttg
gcttatctgcgcctgatgcaaaataccgatgacgacaatgcgctgctgcgcatcatcaac
tatccgacacgcggcatcggcgcgcgcagcatcgaacagatacaggattcggcaaagatg
cacggcaccacgctgtgggatgccgccgcccgtgcgggcggcaaagtatccgccttcgtc
ggcctgatcgaagccatgcgaagtgccacgagcgccttgccgctgcctgaaatcatggaa
catgtgctggtacacagcggtcttatcgagcactatcaaagcgaaaaaggcgccaagaaa
cgagaagcggaagagcgactggaaaatctgaaagaactggtcaccgcagccacgttgttc
gtgcatgaaaacgaagacgacagcctgacgtcctttctgacccacgcctcgctcgaagcg
ggagaacatcaggcgggcgatcaggacgatgcgctgcatctgatgaccgtgcatgcggcc
aaagggttggaatttaacgccgtgtttatcacaggcctcgaagaaaacttatttccgcat
cagaacagccagcgggtcgatggcggtctggatgaagaacggcgcctgatgtatgtcgcg
attacccgcgcacgccggcgtctgtatatgagttttgcgcagcgtcgcatgctgaatggt
caggtgagttatggcgccccctcgagtttcttaaaagaattacccgaagatttgctgcaa
tggctatccgctcgcgaagcgccgcgcaacccgtttgcctccttcggttatagcgcacct
gcggcacccgtacagcattccgtcagcagcacaggatggcgcaccggtcagcgcgtgatg
cacctgaaattcggtgaaggggtgatcacaggggtcgaaggcagcggcaccgacggacgc
gtacaggtcaatttcaaacacgccggcagcaaatggctggcgctcgaatacgcgaaactc
accgcactatga
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