Gallionella capsiferriformans: Galf_0552
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Entry
Galf_0552 CDS
T01295
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
gca
Gallionella capsiferriformans
Pathway
gca03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gca00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Galf_0552
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gca03021
]
Galf_0552
03400 DNA repair and recombination proteins [BR:
gca03400
]
Galf_0552
Enzymes [BR:
gca01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Galf_0552
Transcription machinery [BR:
gca03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Galf_0552
DNA repair and recombination proteins [BR:
gca03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Galf_0552
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
ADL54595
UniProt:
D9SCD0
LinkDB
All DBs
Position
600341..604588
Genome browser
AA seq
1415 aa
AA seq
DB search
MKSLLDLFKQVTQKEEFDAIKIGLASPEKIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLSKVRRERMGHIELASPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVTEPGMTPLNRGQLLSDDDYLAKTEEYGDEFTALM
GAEGVRALLSGLDVMSEIETLRADLQATGSETKIKKYAKRLKVLEAFSASGIKPQWMVLE
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLRRLLELKAPDIIVRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRQLKSLADMIKGKSGRFRQNLLGKRVDYSGRSVIVVGPQ
LKLHQCGLPKKMALELFKPFIFSRLEAMGLATTIKASKRMVEAEEPVVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQMEC
RTLLLASNNVLSPANGEPIIVPSQDIVLGLYYMTRENIGVKGEGSMFANIAEVSRAYESR
EVDLQAKVIVRLKEFHKDEAGEFVEKLVRHDTTVGRALLSEVLPAGLPFALINKALKKKE
ISRLINASFRQCGLRDTVIMADKLMYTGFTYATRAGISICIDDMLMPPEKADLIGAAEKE
VMEIHTQYTSGLVTDGERYNKVVDIWGRTGDMVAKAMMDQLSSEPVLDRITGEVRMTNGK
PMMQESLNSIYMMADSGARGSAAQIRQLSGMRGLMAKPDGSIIETPITANFREGLSMLQY
FISTHGARKGLADTALKTANSGYLTRRLVDVTQDLVVVEEDCGTVNGAMMKAIVEGGEVI
EALRERILGRVLSRDVVNPESGETLYEIGCLLDETAVERIEALGVDEVEVRAPLKCETRF
GLCAKCYGRDLGRGSMVNVGEAVGVIAAQSIGEPGTQLTMRTFHVGGAASRNVVASQVEG
KSNGVLKYSPNMRVVTTLRGEAIVVARSAEIIIADDYGRERERHKIPYGATLVIKEGAAV
RAGEVLATWDPHTRPIITEYAGRVSFQNVEEGVTVAKQIDEVTGLSTLVVIDPKQRTAAQ
NKAGTMVRPMVRLFDESGEDVKLTGTETAVSVTFQTGCIITVEDGQMVGIGDVLARIPQE
SSKTRDITGGLPRVAELFEARIPKDAGMLAECTGTVSFGKETKGKQRLVITDVEGLASEF
LIPKEKHVLVHDGQMVTRGEMIVDGPADPHDILRLLGVAELARYITDEVQEVYRLQGVKI
NDKHIEVIVRQMLRRVQVKEVGDTRFIVGEQVERADLLEENEKMSAAGKEPATFEFMLLG
ITKASLSTDSFISAASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGMAYHNA
RRKQGLGIDMAQGRDFMAAESAPAGELLDSAVVSE
NT seq
4248 nt
NT seq
+upstream
nt +downstream
nt
atgaagtcattgttagatttgttcaaacaggtcacacaaaaagaagaattcgatgcgatc
aagattggtcttgcgtcacctgagaaaattcgttcctggtcgtatggcgaagttaaaaag
cctgaaaccatcaactaccgcacctttaaacctgagcgcgacggtctgttctgcgctaag
attttcggaccggtaaaagattacgaatgtttgtgcggtaagtacaaacgcctgaaacat
cgcggtgtgatttgcgagaagtgcggcgttgaagtcaccctgtccaaagtgcgtcgcgaa
cgcatgggacatatcgaactggcaagtccggtcgcgcatatctggtttctgaagtctctg
ccatcccgtttgggtatggtactggacatgacgctgcgcgatatcgagcgtgtcttgtac
ttcgaagcctatgtcgtgactgaacccggcatgacaccgcttaaccgcggtcagttgttg
tctgacgacgactatctggctaagactgaagagtacggtgacgaattcactgcactgatg
ggcgctgaaggcgtgcgtgccttactctccggtcttgatgtcatgagtgaaatcgagacg
ttgcgtgcggatttgcaggcgaccggctctgaaactaagatcaaaaagtacgctaagcgt
ctgaaagtgctggaagcgtttagcgcatccggcatcaagccgcagtggatggtgctggaa
gtcttgccggtattgccacctgaattgcgtccgttagtgccactggatggcgggcgcttc
gcgacatctgatctgaacgatctgtatcgtcgcgtgatcaaccgtaacaaccgtctgcgc
cgcctgctggaactgaaggcgccggatatcatcgtgcgtaacgaaaagcgcatgttgcaa
gaagcggtcgattcgctgctggacaatggtcgtcgcggcaaagcgatgaccggtgcgaac
aagcgccaattgaagtcattggctgacatgatcaagggtaagagcggtcgtttccgtcaa
aacttgttgggtaagcgcgtcgattattccggtcgttccgtgatcgtggtggggccgcag
ctcaaactgcatcagtgcggtttgcctaagaaaatggcgctggagttgttcaagccgttt
atcttcagtcgtctggaggccatgggactggcaacgacgatcaaggcaagtaagcgtatg
gtcgaggctgaagaaccggtcgtgtgggatattctcgaagaagtcatccgcgaacatccg
gtgatgttgaaccgcgcaccaaccttgcaccgtttgggtattcaagcattcgaaccgatc
ctgatcgaaggtaaggccattcaattgcacccgttggtttgtacggcattcaacgccgac
ttcgacggcgatcaaatggcggtacacgttcctctgtcgctcgaagcgcagatggaatgc
cgtaccctgttgctggcatccaacaacgtattgtcacctgcgaatggtgagccgattatt
gttccttcacaggatatcgtgctgggtctgtactacatgactcgcgaaaatatcggcgtc
aagggcgaaggttcgatgtttgccaatatcgcagaagtttcgcgtgcctatgagtctcgt
gaagtggacttgcaagctaaggttatcgttcgtctgaaggaattccataaagacgaggcg
ggcgagtttgtagaaaagttggttcgtcatgacacgacagtgggtcgtgcgctgctctca
gaagtgttgccggccgggctgccgttcgcattgattaataaggcattgaaaaagaaagag
atttcaaggctgattaatgcgagtttccgtcagtgcgggttgcgcgataccgttatcatg
gccgataagctgatgtacaccggctttacttatgcgacgcgcgcgggtatttcgatttgt
atcgatgatatgttgatgccgccggaaaaagcggatctgatcggtgcagcagaaaaagaa
gtgatggagattcacacccagtacacctcgggtctggtgacggacggcgaacgctataac
aaggttgtggatatctggggtcgtaccggtgacatggtggctaaggccatgatggatcaa
ttgagctccgagcctgtcctggaccgtattacgggtgaagttcgcatgacgaacggcaag
cctatgatgcaggaatcgttaaattcgatttacatgatggccgactccggtgcgcggggt
tctgctgcacagattcgtcagttgtccgggatgcgcggtttgatggctaaaccggatggt
tcgattattgaaacgccaatcaccgcgaacttccgcgaaggtttgagcatgttgcagtac
tttatttcgacccacggtgcccgtaagggtctggccgatacggcgttgaagacagcgaac
tcaggttacctgacacgtcgtctggtcgatgtgacgcaggatctggtggtggtggaagag
gactgtggcacggttaacggcgcgatgatgaaggcgatcgttgaaggcggtgaagtcatc
gaagccttgcgcgaacgtattctgggtcgtgtattgagccgtgatgtagtcaatcctgag
tcaggtgaaactctgtacgaaatcggttgcctgctggatgaaaccgcggttgaacgtatc
gaagcgctgggcgtggatgaggttgaagttcgtgcaccgttgaagtgtgagacgcgcttc
ggtctgtgtgctaagtgctacggtcgtgatctgggtcgcggttcgatggttaacgtgggt
gaagcagtgggtgtgatcgctgcgcaatccatcggtgaaccaggtacccagttgacgatg
cgtaccttccacgtcggcggtgccgcatcacgtaacgtcgtcgcgagccaggttgaaggt
aagtctaacggtgtgctgaaatacagccctaatatgcgcgtggtgaccaccttgcgcggt
gaagcgattgtcgttgcgcgtagtgcggaaattatcatcgccgatgattatggtcgcgaa
cgcgaacgccataagattccatacggtgcgacgctggtgattaaggaaggcgctgctgtc
cgtgccggtgaagtcctggcaacctgggatccgcatacccgtcctatcattactgagtac
gcaggtcgtgtcagcttccagaacgttgaggaaggtgtgacggttgctaagcagatcgat
gaagtgactggcttgtcaacgctagtggttatcgatcctaagcagcgtactgcggcacaa
aacaaggccggcacgatggttcgtcctatggttcgcctgttcgatgaaagcggtgaagat
gtcaagctgacaggcacagaaacagcggttagtgtgacgttccagaccggttgcattatt
acggtagaagatggtcagatggttggtattggtgatgtattggcgcgtattcctcaggaa
tcttccaagactcgcgatattaccggtggtttgccgcgtgtggctgagttgttcgaagcg
cgtatccctaaagatgccggcatgctggctgagtgtaccggtacggtatcgttcggtaag
gaaaccaagggcaaacagcgtctggttattaccgatgttgaaggtctggcaagcgaattc
ctgattcctaaggaaaaacatgtgctggttcacgatggtcagatggtgacgcgcggtgaa
atgatcgtcgacggtcctgctgatcctcacgatattctgcgcctgttgggcgtcgcggag
ctggctcgctacatcactgatgaagttcaggaagtgtaccgtctgcaaggcgttaagatc
aacgacaagcacattgaagtgatcgtgcgtcagatgttgcgtcgcgttcaggtgaaagaa
gtgggtgatactcgctttatcgtgggcgaacaggtagagcgcgcagatctgctggaagaa
aacgagaaaatgagtgctgccggcaaagagccagctactttcgaatttatgctgctgggt
attaccaaggcatcgttgtcgaccgattcgtttatctcggccgcttccttccaggaaaca
acccgtgttctgaccgaagctgcgatcatgggcaaacgcgacgaattgcgcggtctgaaa
gaaaacgtcattgtgggtcgtctgattccggccggtaccgggatggcttaccacaatgca
cgacgcaagcagggtctgggtattgatatggcgcaaggtcgtgattttatggctgcagag
tcggcacccgccggtgagttgcttgacagtgcggtggtttctgaatag
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