Gallionella capsiferriformans: Galf_1240
Help
Entry
Galf_1240 CDS
T01295
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
gca
Gallionella capsiferriformans
Pathway
gca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Galf_1240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gca03019
]
Galf_1240
03009 Ribosome biogenesis [BR:
gca03009
]
Galf_1240
Enzymes [BR:
gca01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Galf_1240
Messenger RNA biogenesis [BR:
gca03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Galf_1240
Ribosome biogenesis [BR:
gca03009
]
Prokaryotic type
rRNA processing factors
Galf_1240
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ADL55268
UniProt:
D9SFH1
LinkDB
All DBs
Position
complement(1341394..1343898)
Genome browser
AA seq
834 aa
AA seq
DB search
MKRMLFNATQPEELRVAIVDGQKLIDLDIEIAGKEQRKSNIYQAVITRIEPSLEACFVEY
GGNRHGFLPFKEVAPQFHQPGCGPRPSIKEALREGQELLVQIEKDERGNKGAALTTYISL
AGRYIVLMPNNPNGGGVSRRIEGDERAELREVLSNLEVPDGMSIIARTAGIGRNEEELQW
DLNYLNQLWTAIADAAKSEKAPSLIYLESSLVVRAIRDYFNPEIGEILIDTDEVYQQAHA
FMSTVMPDNVNRIKRYVDDVPLFSRFQIEHQIESAHSREVRLPSGGAIVIDHTEALTAID
INSARATKGSDIEATAFNTNLEAAEEIARQMRLRDLGGLIVIDFIDMENSKNQRDVENRL
RDSLRFDRARVQTAKISRFGLLELSRQRLQPSLGESNYITCPRCSGIGHIRGTESSALHI
LRIIQEEAMKDSSAAIHAQVPVDVATFLLNEKRGDLHRIESRLRVPITLIPNPHLETPNY
TINRLRQDELTGDAQPSYTLVEKPEENKADQEPQKGVRVQAAVKGITPVAPAPTAPVKTE
PAATPGLLSQIGGWFKSLVAAEPEKETPAVSRPPRGRNDRPERSERGDRPDRNEGRKRRD
RNPERNAAQAIEKSAEKSTEKSTVTAEVRQPRPPRPPRPPKVANEQRPTEEKPVIESIAA
EGETEAEKTEKSSARRRGRRGGRREREKREVTPGSENAGAADNQESASTAVQPQTKVKPT
EYIAMPSNMAVAPVATPVVTETVAASVVAEVVAPVVAEAVAAPVAAEMVAAPVVNVAVET
KSAGLVQIETAPNKVSTETPVERPQPVIRRRARPLEVYVENEPLVQIETQNPKS
NT seq
2505 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgttattcaatgcgacacaaccggaagaactccgtgtcgccattgtggac
ggtcaaaagttaattgacctcgacattgaaatcgccggcaaagaacaacgcaagagcaac
atctatcaagctgttatcacccgcattgagcccagtttagaggcttgcttcgtcgagtac
ggcggcaaccgtcacggctttttgcctttcaaagaagtcgcacctcaattccaccaaccc
ggatgcggcccccgcccttccatcaaggaagcgctgcgcgaaggccaggaattactggtt
cagattgaaaaagatgagcgcggcaataagggtgcagccctgaccacctacatcagcttg
gcgggtcgttacatcgttttgatgcctaacaatcctaatggcggcggcgtatcgcgccgt
attgaaggcgacgagcgcgccgaattgcgtgaagtgctatccaatctggaagtaccggat
ggcatgagcatcatcgcgcgcaccgccggcatcggtcgcaacgaagaagagctgcagtgg
gacttaaactacttaaatcagctgtggaccgcgattgccgatgcggcaaaatctgaaaaa
gcaccgtcactgatttatctggaaagttctttagtcgtgcgcgccatccgcgactacttc
aatccggaaatcggcgaaatcctgatcgacaccgacgaagtgtatcaacaggcacatgcc
ttcatgagcaccgtaatgccggacaacgtcaatcgcatcaagcgctatgtggatgacgtg
ccgctgttttcacgcttccagatcgaacatcagatcgagtccgcccattctcgcgaagtg
cgtctaccctcgggcggcgcgatcgtgatcgatcacaccgaagcgctcaccgccatcgac
atcaactccgcacgcgcaaccaaagggtcggacattgaagcgactgcgttcaataccaat
ctggaagcggccgaagaaatcgcccgccagatgcgcctgcgcgatttgggcggtctgatc
gtgatcgactttatcgacatggaaaacagcaagaatcagcgcgacgtggaaaaccgcctg
cgtgactcgctgcgctttgaccgtgcccgcgtgcagacagcaaaaatctcgcgcttcggc
ctgctggaattatcccgtcagcgcctgcaaccctcgcttggcgagagtaactacatcacc
tgtccgcgttgcagcggcatcggccatatccgcggcaccgaatcctccgccttgcacatc
ctgcgcatcattcaggaagaggcgatgaaggacagcagcgcggccattcacgctcaggta
ccggtcgatgtggcaaccttcctgctcaatgagaagcgcggcgacctgcaccgcatcgaa
tcgcgcctgcgcgtgccgatcacgctgatcccgaatccacacttagaaacgccaaactac
accatcaaccgtctgcgtcaggacgaattgacgggggacgcgcagcctagctatacactg
gtcgaaaaaccggaagaaaacaaagctgatcaagaaccgcaaaaaggggtacgcgtacag
gccgctgtcaaaggcatcacgcccgtcgcaccggcgccgaccgcacctgtaaaaacggaa
cctgcagcgactcccggcctgctcagccaaatcggcggctggttcaaatcactggttgca
gcagaacctgaaaaagaaacgccagcggtgagccgtcctccgcgcggccgcaatgataga
cctgaacgctctgagcgcggtgatcgcccggatcgcaacgaaggccgcaagcgtcgcgac
cgcaatcctgaacgcaacgcagctcaggcgattgaaaagtcggcggaaaagtcgacagaa
aaatcgacggtaacggcggaagtcagacagcctagacctccgcgtccaccacgtccgccc
aaagttgcgaatgaacagcgcccaacagaagaaaagccggtcatcgaatccatcgcagct
gagggtgaaacagaagctgagaagactgagaagagcagcgcccgtcgcagaggacgtcgt
ggcggtcgtcgcgaacgtgaaaaacgtgaagtgacacccgggtctgaaaacgcgggtgct
gctgataatcaggaaagcgcatcgacagccgttcagccgcagaccaaagtcaaaccgacg
gaatacatcgcgatgccaagcaatatggcggtcgcacccgtcgcaacacctgtcgtgacg
gaaacagttgcagcgtctgttgtagctgaagtggttgcgccagtcgtagctgaagcggtt
gccgcacctgttgcagctgaaatggttgcggcccccgtcgtcaatgttgccgttgaaacc
aaatcagcaggtctggtacaaattgaaaccgcaccgaacaaggtttcaactgagacgccc
gtcgaacgtccccagccggtaattcgtcgccgtgctcgcccgcttgaagtttacgttgag
aacgaaccactggttcaaatcgaaacgcaaaaccccaagtcctaa
DBGET
integrated database retrieval system
