Gallionella capsiferriformans: Galf_1265
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Entry
Galf_1265 CDS
T01295
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
gca
Gallionella capsiferriformans
Pathway
gca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Galf_1265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gca03019
]
Galf_1265
03016 Transfer RNA biogenesis [BR:
gca03016
]
Galf_1265
Enzymes [BR:
gca01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Galf_1265
Messenger RNA biogenesis [BR:
gca03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Galf_1265
Transfer RNA biogenesis [BR:
gca03016
]
Prokaryotic type
tRNA degradation factors
Galf_1265
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
OB_RRP5_4th
KH_2
S1_RRP5
KH_SLS1_2
Motif
Other DBs
NCBI-ProteinID:
ADL55293
UniProt:
D9SFJ6
LinkDB
All DBs
Position
1368898..1371003
Genome browser
AA seq
701 aa
AA seq
DB search
MSHFKKTIAFGKHQLTIETGEIARQASGAVLVSLDDTVVLVTVVGRKDAKPEQDFFPLTV
DYQEKTYAAGKIPGSFFKREGRASEKEILTSRLIDRPLRPLFPESFYNEVQIIATVMSSD
SEIDSDIPSLIGASAALAISGIPFEGPIAAARVGYANGQYLLNPTKTELVTSQMDLVVAG
TDRAVLMVESEAQQLSEEVMLGAVMFGHEQFQIVINAINEMAEAVGKPMWDWTPPAKNEA
LIAQIAELAEAELQAAYAIRSKQERTDAISAIHSKVLASVSPDLEKNAVNELFGALEAKI
VRGQILSGEPRIDGRDTRTVRQITIRNGVLARTHGSALFTRGETQAVVVATLGSMRDAQK
VDALQGEFTDRFMLHYNFPPFATGETGRVGSPKRREIGHGRLAKRALVAVLPSEEDFGYA
VRIVSEITESNGSSSMASVCGGCLSMLDAGVPLKAHVAGIAMGLIKEGNRFAVLSDILGD
EDHLGDMDFKVAGSENGITALQMDIKINGITREIMQAALSQAKEGRLHILGIMKESMSGV
RSELSEFAPRMIKMKINPEKIRDVIGKGGAVIRALTEETGTTIDIDDAGNITISSVNGEA
GELAKKRIEDIAMDVEVGKIYEGPVVKLLDFGALINILPGKDGLLHISQIAHERVNSVGD
YLKEGQVVRVKLLEMDDRGRMKLSMKALLDAPVANGASIAE
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
ttgagtcatttcaaaaaaacaatcgcgttcggtaaacatcagctgaccatcgagaccggc
gaaatcgcccgtcaggcaagtggtgccgttctggtaagtctcgatgataccgtggtgctg
gtcaccgtggttggccgcaaagacgccaagcctgaacaggactttttcccgttgaccgtc
gattatcaggaaaagacttatgcggcagggaaaattcccggcagtttcttcaagcgcgaa
ggccgtgccagcgaaaaggaaattctgacctcgcgcctgatcgatcgtccgttgcgtcca
ctgtttcctgaaagtttttataacgaagtgcagatcatcgcgaccgtgatgtcgtccgat
agcgagatcgattcggatattccatcgctgatcggtgcctctgctgccttggcaatttcc
ggtattccgttcgaaggcccgattgcggctgcccgtgtgggttatgctaacggtcagtat
ctactgaatccgactaagaccgagcttgtcacgtcccagatggatctggttgtcgcaggg
actgaccgtgccgtgctgatggtcgagtctgaagcgcaacaattgtccgaagaagtgatg
ttgggtgcggtgatgttcggtcacgagcagttccagatcgtgatcaatgcgattaacgaa
atggctgaagccgtcggcaagccgatgtgggactggacgcctcctgccaagaacgaagca
ctgatcgctcagattgcggaactggctgaagccgagctgcaagcggcttacgcaattcgc
tccaagcaggaacgtaccgatgcaatttcagcgattcattccaaagtattggcgtccgtt
tcgcctgatctggaaaagaatgcagtcaacgaattattcggcgcgttagaagctaagatc
gttcgcggtcagattctctccggtgagcctcgcatcgacggtcgcgatacccgcaccgtg
cgtcagatcacaatccgcaatggcgtattggctcgtacccatggttcagccttgtttacc
cgcggtgagactcaggctgttgtcgtggcaaccttgggcagtatgcgcgatgcgcagaag
gttgatgcgctgcaaggcgagtttaccgaccgttttatgttgcattacaacttccctccg
ttcgcaaccggcgaaacaggccgcgtaggttcgcctaagcgtcgtgaaatcggtcacggc
cgtctggccaagcgcgcactggttgccgtgttgcctagcgaagaagacttcggctatgcc
gttcgtattgtgtcagagatcactgaatctaacggttcaagctctatggcgtcggtttgc
ggtggttgcttgtcgatgctcgatgcaggtgttcctctgaaagcccatgttgcaggtatc
gcgatgggtctgattaaagaaggtaaccgctttgccgtgttgagcgatattctgggtgat
gaagatcatctgggcgatatggacttcaaggtggcaggttctgagaacggcatcaccgcg
ttgcagatggacatcaagattaacggcattacccgtgaaatcatgcaggctgcattgagt
caggctaaggaaggtcgtttgcacattttgggcatcatgaaggaatcgatgtcgggcgtg
cgcagtgagttgtctgaattcgcaccgcgtatgatcaagatgaagatcaatcctgaaaaa
attcgtgatgtgatcggtaagggcggtgcggttatccgtgcgctgactgaagaaaccggc
acaaccatcgatatcgacgatgcaggtaatatcaccatctccagcgtcaacggagaagcc
ggtgagttggccaagaagcgcatcgaagacatcgccatggacgttgaagtgggcaaaatc
tacgaaggccctgtggtcaagttgctggatttcggtgcattgatcaacattctgccgggc
aaggatggtctgttgcacatctcgcaaatcgcacacgaacgcgtcaacagcgtgggtgat
tacctcaaagaaggtcaggtcgtgcgcgtcaaactgcttgaaatggatgaccgcggtcgt
atgaagttgtcgatgaaggcgttgctggatgcgcctgtcgccaacggtgcttcgattgcc
gagtaa
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