Gallionella capsiferriformans: Galf_1432
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Entry
Galf_1432 CDS
T01295
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
gca
Gallionella capsiferriformans
Pathway
gca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Galf_1432
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gca03019
]
Galf_1432
03400 DNA repair and recombination proteins [BR:
gca03400
]
Galf_1432
Enzymes [BR:
gca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Galf_1432
Messenger RNA biogenesis [BR:
gca03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Galf_1432
DNA repair and recombination proteins [BR:
gca03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Galf_1432
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
DEAD
Helicase_C
AAA_19
UvrD_C
UvrD_C_2
ResIII
Viral_helicase1
DprA_WH
AAA_11
Motif
Other DBs
NCBI-ProteinID:
ADL55453
UniProt:
D9SG06
LinkDB
All DBs
Position
complement(1566790..1571913)
Genome browser
AA seq
1707 aa
AA seq
DB search
MQTIVVEEIGFHPKSLCIDLETSVETEAVIYKIAAWRADTEQSEVFKGRFQTAEVTPKLD
MLTVGASFLLGHNVVEHDLRLLKRNYPDLALLTLPVIDTLQLSPIAFPQNPYHSLIKDYK
LVRDSINDPLKDAQLSFKLFNDQRDALNALNVSAPDELVCYYFLMTSAEGNGLSSLFRSI
LHAARPELDLVKELYKSAVQGKVCNTRLEKLVQEDINNVTLHMPLAYALAWLRVSGGNSV
LPPWVGMQFPETKVLLKELRDQRCNQADCAYCNTVHDPISELKRYFGFDEFRAEPANLQG
GSLQEDIVSTGMRAEHLLAILPTGGGKSLCYQLPALNRYWRNGSLTVIISPLQSLMKDQV
DNLVKQGLFCGAALNGMLSVPERRDVLEKVRLGDIGILLVSPEQLRNKSFIDAIRHREIG
AWVFDEAHCLSKWGQDFRPDYIYASRFIKEHIRDELPQIACFTATAKVEVIEDLRAHFKE
ILGVELKLFAGGHERNNLHYEVINTTSHEKFGLIHKILGAELNDFEGGAIVFAAKRKSAE
DISAFLKEMGWNCAFFHAGLQPDEKNDVQQNFISGGLRVIVATNAFGMGVDKPDVRAVIH
AEIPGSLENYLQEAGRAGRDRNQSRCILLYDEEDVEVQFGLAARSRLSRKDIGEILRSLR
KRSNKAKDNKIVITSGEILADEDQDSEIDAESRDAETRVKTAVSWLERARLLQRNENETR
VFPASLKIGSLQLAGEKLKAANLTVDNQAKYLKIVQLLINADATDGISTDELMLQTGMHS
DECMRVLQQMELLGILSNDIGITVRLRKGIANSSQDRFVQIATIEQALLDLLAERTPDSE
ANEWQELNLRNLCQGVKDRIGAEVITDDLLSLLRAMSQPFGNTQAERPSFEIKKITRDHF
RVKLRRSWQQIREISDKRRAISQVLLSFFLGKLPAETRGADLLVESTAGKLCEVLREDLG
MIGQIRDEAKALEQGLMYLDRIKSIHLDRGRTVFRSAMTIHVFADEAKRGFRQSDYVGLQ
EYYEERNFQIHVVQEYARLGLEKLNDAMVFIAAYFRWSKSDFIKRYFASRKELLELATTG
ESLNRIVDNLKHPLQQSLVADKSDTNRLILAGPGSGKTRVIVHRVAYLLRVLRTPADGII
VLTFNRLAAFEVRKRLIDLVGQDAYGVTVLTYHAMAMRLTGTSLRGMAEKNDTPNFDEII
RNAINLLQGNGRLGEDDSDELRDKLLQGYRYILVDEYQDIDADQYDLISALTGRVQADRD
SKLTIMAVGDDDQNIYEFRKTSNEFIKRFQEDYQAKIEYLIENYRSSSHIIAAANQIISD
NPERLKQEHPIRINFRRQTDFYGGRWEKLDSLVKGRVHVVRCSSDANIQAQMAMAEVRRL
FELLPSANWGDFAILARSHKLLTPIRAYCELNGIPCVQIENGRTAENLKLNQLREGQLLI
RLLLNSRRKLVAKRTLVRWINNHVAKQPANHWLKLLQQCIEEFCVAWSMDEIPSSQLLEW
IFEFSNEQRSSIAGKLTISTVHASKGREFNHVIVLDGDWLSQSTPEERRLYYVGMTRAKQ
TLTLFEFFDSPNPFSITIRNQRYALLSDLGFYPQADPALDIKFIELGLADVDMDFAGRLP
ADAAIHRAIASLVVGAELRLTGRELQTMAGIVVGRLSKNCSISEVDVISISVFAIASRHE
EAVSDAGWRDRLKVKSWETILCLIKKR
NT seq
5124 nt
NT seq
+upstream
nt +downstream
nt
atgcaaacgatagtggttgaggaaatcggatttcatcccaagtcactttgtattgatttg
gaaacatcggtcgagacagaagccgttatttataaaattgctgcctggagggcggatact
gagcaaagtgaagtattcaaaggacggtttcaaactgcagaggtaacgcctaagctagat
atgctgacagttggtgcatcgtttctgctgggacacaatgtagtcgagcatgacttgcgt
ctcttgaagcgaaattatcccgatttggcattattgaccctgcctgtcattgatacgctg
caattatctcctattgcctttccgcagaacccataccacagccttattaaggattataag
ctggtaagagattctatcaatgacccattaaaggacgcacagctttcctttaagttattt
aatgatcagcgcgatgcacttaatgcgctcaatgtatccgcgcccgatgaactggtttgc
tattattttttgatgacgtcagctgagggcaatggattatctagcctgttcaggagtatt
cttcatgcggcacgcccggaactggacttggtcaaagaactatacaaatcggcggtgcag
ggtaaggtgtgtaacacacggttggaaaaactggttcaggaggacataaataacgtcact
ctgcacatgccgctagcctatgcactcgcttggttacgcgtgtccggtggaaattccgtt
ctcccgccctgggtcggcatgcagtttcccgaaactaaagtcctgctcaaggaattgcgt
gaccagcggtgtaatcaggcagattgcgcttattgcaacacagtccatgatcctatctca
gagttaaaacgctatttcggttttgatgagtttagggccgagccagctaatttacagggc
gggtcgctacaagaagatattgtttcaactggtatgcgtgctgaacatctgctggctata
ttgccaaccggcggtggaaagtctctttgttatcaattgcctgcacttaatcgctattgg
cgtaatggcagtctgacggtaattatttcaccattgcagtcgttgatgaaggatcaggtc
gataatcttgtaaaacaaggacttttctgcggggcagcgcttaatggcatgttgagtgtg
cctgagagacgcgatgtgcttgaaaaagttaggctaggagatattggtattttattggtt
tcacctgagcaactacgcaataaaagctttattgatgcgattcgacatcgtgaaatcgga
gcttgggtatttgatgaagcacattgcctgtcaaagtgggggcaggattttcggcctgat
tatatttacgcctccagatttattaaggaacatattcgtgatgagttgccgcaaatcgca
tgttttacggctacagccaaggtcgaggtgattgaagacttacgcgcgcattttaaggag
attcttggggttgaactgaaactctttgccggtggtcatgagcgtaacaatcttcactat
gaggtaataaacacgacgagtcatgaaaaatttggcctgatacataagattctcggggca
gaacttaatgattttgaaggtggtgcgattgtgttcgcggcaaagcgcaagagcgctgaa
gatatttccgctttcctgaaagagatgggatggaattgcgcattttttcatgctggcttg
cagccggatgagaaaaatgacgtgcagcaaaactttattagcggggggctgcgcgtaatt
gttgccaccaatgcttttggcatgggcgtggacaagcctgatgtgcgcgccgtgattcac
gccgagattcccggatcacttgaaaactatcttcaagaagctggacgggcggggcgtgat
cgtaaccagtcgcgctgcatattgctctatgacgaagaggatgtagaggttcaatttggt
ctggcggcacgctctcggctcagtcgtaaggacatcggagagatattgcggtcattacga
aaacgatcgaataaggccaaagacaacaaaattgtaattacctcaggtgaaatattggct
gatgaggatcaagattcagaaatcgatgctgaaagccgggatgcagaaacacgtgtcaaa
acggctgtgtcatggctggagcgtgctagattgttgcagcgcaatgaaaatgaaacccgg
gtgtttcctgcgagcctgaagattggaagtctgcagttggcaggagagaagttgaaggcg
gcaaatttaaccgtggacaatcaagccaaatatttgaaaattgtccaactgctgattaat
gcagatgcaacagacggcattagtacggatgaattaatgctgcaaacaggtatgcatagc
gacgagtgcatgcgagtacttcaacaaatggagttgctgggaattttgagtaatgacatc
ggtatcacggtgagattgcgtaaggggattgcgaactcatcacaggataggtttgttcag
attgcgacaattgagcaggccttactagacttgttggcagagcgtacccctgattctgag
gccaacgaatggcaagaattgaatcttcgtaatctttgccaaggtgtcaaagatcgcatt
ggtgccgaggtgatcacagatgacttgttgtctttgttacgcgctatgagtcagccgttc
ggtaatacgcaggctgaacgtccaagttttgagatcaagaagattacgcgtgatcacttc
agggttaagttgcggcgctcttggcaacaaattagagagattagtgacaaacgtcgcgct
atatctcaagtattgctgagtttctttttggggaaattacctgccgaaacgcgcggtgct
gacctgttagtggaaagcactgcgggcaaattatgtgaagtcctgcgcgaagaccttggc
atgattggacagattcgggatgaggcaaaggcacttgagcagggactgatgtaccttgat
cgtatcaagtccattcatttggatcgcggacgtacagtgttcagatcggccatgacgatt
catgtatttgctgatgaggccaagcgtggtttcagacaaagcgattatgtcggtcttcaa
gagtattatgaggagcgaaattttcagattcatgtggtgcaggagtacgcgcgtctcggg
ctggagaagctcaatgatgcgatggttttcatcgctgcttattttcgctggtctaaaagt
gatttcattaaacgttactttgctagtcgcaaagagttgctagagcttgcaacaacgggc
gagtctttaaatagaattgttgataatctgaaacatccattacaacagtctttagtggcc
gacaaaagtgatacgaaccgtttgattcttgcggggcctggatcgggtaagacgcgtgtg
atcgtacatcgcgttgcatatttactgcgggttttgcgtacgcctgcggatggcatcata
gtgctgacatttaatcgtttggctgcttttgaagtgagaaaacggttgattgatttggtc
gggcaggatgcttatggggttactgtgctgacttaccatgctatggctatgcgtctcacg
ggaacatctttgcgcggtatggcagagaaaaatgatacgcctaattttgatgagatcatt
aggaatgcaataaatttattgcagggtaatggacgactgggagaagatgactctgatgag
ttgagagataaattgctgcaaggttaccgctatattctggttgatgagtatcaggatatc
gacgcagatcagtatgatttaattagtgcgcttactggcagagtacaggcagatcgtgat
tcgaagcttaccatcatggcggtaggggacgatgaccagaatatttatgaatttcgtaag
accagcaatgaattcatcaagcgttttcaagaggactatcaggcaaaaattgaatatctc
attgaaaattaccggtcaagttcacacatcattgcggctgcgaatcaaataatctcggat
aaccctgagcgccttaaacaagaacatccaattcgcataaattttagacgtcaaactgat
ttttatggtgggcgatgggaaaagcttgatagccttgtcaagggcagggtgcacgtcgtt
cgttgttcatctgatgccaacattcaggcgcaaatggcgatggccgaggttcgcaggctt
tttgagttattaccatctgctaattggggggattttgcgatacttgcaaggagtcataag
ctgcttacccccattcgtgcatattgtgagttgaatggtattccgtgcgttcaaattgag
aatggtcgcaccgctgaaaatcttaagctgaatcagctaagagaaggacaattgttgatt
cgtctgttactgaactcaaggcgaaaacttgttgccaagagaactctggtgcgctggatc
aacaatcatgtcgccaaacaacctgcgaatcattggttgaaattgttgcagcagtgtatc
gaagaattttgcgttgcatggagtatggatgaaattccgtccagccagttgttagagtgg
atatttgagttcagtaatgaacaacgtagttccattgcaggaaaactgactatttcaact
gtccatgcatcaaaaggtcgtgaattcaaccatgtcattgtgctcgacggcgactggctg
tcgcaatcgactccagaggaaagacgcttgtattacgttggaatgacgcgagccaaacaa
acgctgacattgtttgagtttttcgattcccccaatccttttagtatcaccatacgcaat
cagcgatatgctctattaagtgacttaggtttttatcctcaggctgatccagccctagac
ataaaatttatcgaattgggtttggctgatgtggatatggatttcgcaggccgcctgcct
gccgatgctgcgattcatcgcgcgattgcctcgctggttgtaggtgctgaacttcgactg
acaggacgggaacttcagactatggcggggattgttgttgggcggttgtcgaaaaactgt
agcatttctgaggtagatgttatttcaatcagcgtttttgcgatcgcatcacgtcatgaa
gaggcagtttcagatgcgggatggcgcgatcgtcttaaagtgaagtcatgggagacaata
ttgtgcttaattaagaaacgctaa
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integrated database retrieval system
