Gallionella capsiferriformans: Galf_1563
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Entry
Galf_1563 CDS
T01295
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
gca
Gallionella capsiferriformans
Pathway
gca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Galf_1563
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gca03019
]
Galf_1563
03400 DNA repair and recombination proteins [BR:
gca03400
]
Galf_1563
Enzymes [BR:
gca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Galf_1563
Messenger RNA biogenesis [BR:
gca03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Galf_1563
DNA repair and recombination proteins [BR:
gca03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Galf_1563
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
RecQ_Zn_bind
HRDC
Helicase_C
ResIII
Transpeptidase
Motif
Other DBs
NCBI-ProteinID:
ADL55581
UniProt:
D9SGD4
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All DBs
Position
1703707..1705539
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AA seq
610 aa
AA seq
DB search
MTIPAQKILLDVFGYTTFRGEQQAIVEHIATGGDALVLMPTGGGKSLCYQIPSLLRAGTG
IVISPLIALMQDQVEALQQLGVRAAYLNSSLSTDTAREVQGQLMRGELDLLYVAPERLMN
ANFLGLLEQVQTRHGLALFAIDEAHCVSQWGHDFRPEYRELTILRDRFPAVPRIALTATA
DAPTRREIVERLSLEQAREFVSSFDRPNIRYKITNKDSVINQLQYFINKEHPDEAGIVYC
LSRRRVDETAAKLKALGWDALPYHAGLDAATRAANQSRFLREEGVIMVATVAFGMGIDKP
NVRFVAHIDLPKSMEGYYQETGRAGRDGLPADAWMAYGLGDVVSMRQMLLSGDAPEERKR
VELQKLDALLGFCESTACRHQTLLRYFGESHPGNCQECDNCLNPVQVWEATREAQMALSC
VYRTGQRFGVGHLVDVLLGKETERVTKFGHKQLSTFGIGVEHTAQQWSSVYRQLIAGGYL
EADIEAYGGLMLTATARPVLRGEQPVSLRRDTEPAKRKSVKSGTESKSREPFSGANEDRL
WLALKAKRMELAREQGVPPYVIFHDSTLLEMHDQRPGSLTDMGHISGIGQGKLARYGDDF
LKVIEDVANR
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atgaccattcctgcacaaaaaatccttctcgacgtttttggatataccacctttcgcggt
gaacagcaggccatcgttgaacacatcgccactggtggtgacgcgctggtactcatgccg
accggcggtggaaaatcgctgtgctatcagattccttcgctgctgcgggccggcacgggc
atcgtcatttcaccgctgatcgcactgatgcaggatcaggttgaagcactgcaacaactg
ggcgtcagagcggcctatctcaattccagcctgtcgacggataccgcacgcgaggtgcaa
ggccagttgatgcgaggcgaactcgacctgttgtacgtcgcgcctgagcggctgatgaat
gcgaattttctgggcctgctcgaacaggtgcagacgagacatggacttgcgctgtttgcc
atcgacgaggcgcattgcgtctcgcaatgggggcacgacttccgtcctgaataccgtgaa
ctgacgattttgcgggatcgcttccccgctgtgccgcgcatcgcactgaccgcgaccgcc
gatgcacctacccggcgcgaaatcgtagaacggctctcgctcgaacaggcacgcgagttt
gtctccagcttcgaccggccgaatatccgctacaaaataacaaacaaagacagtgtaatc
aatcagctgcaatactttattaacaaagagcatccagatgaggcgggcatcgtatactgc
ctgtcgcgtcgacgagtagatgaaaccgccgcaaaattaaaagcgctaggctgggatgcg
ctgccttatcatgcagggctggacgcggcaacgcgggccgccaatcagagccgctttctg
cgcgaagaaggcgtgatcatggtggcgaccgttgcattcggcatgggcatcgacaagcct
aacgtgcgctttgtcgcccacatcgatctgcccaagagcatggagggatattatcaggaa
acgggccgtgccggccgggatggcctacccgccgatgcatggatggcctatggtctgggc
gatgtggtgtcgatgcggcagatgctgttatcgggcgatgcaccggaagaacgaaaacgg
gtggaactgcaaaagctcgacgcactgctcggtttttgcgaatcgaccgcctgccgccac
cagaccctgctgcgctacttcggcgagtcgcatccgggaaattgtcaggagtgcgataac
tgtctgaatcccgtacaagtgtgggaggcaacgcgcgaagcgcagatggcgctgtcctgc
gtatatcgcacaggtcaacgcttcggcgtcggccatctggtcgatgtgctgctgggcaaa
gagaccgagcgcgtgaccaaattcggccacaagcaactgtccacgttcggcatcggtgta
gagcacacggcccagcaatggagcagcgtgtatcgtcagctcatcgcaggcggatatctc
gaagcggatatcgaagcctatggcggactgatgctgaccgcaacggcccgccccgtactc
agaggcgaacaacccgtatcgctgcgccgcgatacggaacctgccaaacgcaaatcggtt
aaatcggggacagagagtaagtcgcgcgagccgttttcaggcgcaaatgaggatagatta
tggctcgcactcaaggcaaaacgcatggaactggcgcgtgaacaaggtgtgccgccctat
gtgatttttcacgacagcacgctgctggaaatgcacgatcagcgccccggtagtctgact
gacatgggacatatcagcggcataggtcagggtaaacttgctcgctacggcgatgatttt
ttgaaagtgatcgaggatgtcgcaaaccgctaa
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