Gallionella capsiferriformans: Galf_1649
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Entry
Galf_1649 CDS
T01295
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
gca
Gallionella capsiferriformans
Pathway
gca03410
Base excision repair
gca03430
Mismatch repair
gca03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Galf_1649
03430 Mismatch repair
Galf_1649
03440 Homologous recombination
Galf_1649
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gca03400
]
Galf_1649
DNA repair and recombination proteins [BR:
gca03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Galf_1649
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Galf_1649
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Galf_1649
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHHA1
DHH
RecJ_OB
Glyco_transf_4
Motif
Other DBs
NCBI-ProteinID:
ADL55665
UniProt:
D9SGL8
LinkDB
All DBs
Position
complement(1807816..1809504)
Genome browser
AA seq
562 aa
AA seq
DB search
MTQITPRDIPAIAFHNLTDEGYPPAMAKIFAARGIENKVQLDATFAHLVSFEYLKNAKTM
AVMLADAIAARKKLLVIADYDCDGATACAVAVRGLRAFGASIDFIVPNRFEYGYGLTPEI
VQLAHESKPDILLTVDNGIASVDGVAAANRLGMQVFVTDHHLPGDMLPDAACIVNPNQPG
CEFPSKHLAGVGVIFYVLLALRAELRNRGQLTEAQGRALPELLDLVALGTVADVVRLDQN
NRILVQQGLLRIRAGRACKGISALLQVSKKSPEKIVSLDLGFTVGPRLNAAGRLDDMSLG
INGLLTDDEGVAMGIATQLDTLNRERRSIETDMQEGALAVLDTVNPQDNFSLTLFDESWH
QGVIGILASRLKDKFHRPVIAFAQANSGELKGSGRSIAGLHLRDALDLVSKRSPTLIKKF
GGHAMAAGLSIDAADFDAFVAAFEQVASELLTPNDLLQRIETDGPLDSSGLTLEAARLLD
EQVWGQGFPAPQFDDDFEVLNQRVVGEKHLKLQLATDEGQSIDAILFGHNEPLPEFIHAV
YSLSINEYKGAQTLQLIVRHWE
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgacacaaatcaccccacgggacattccggcaatcgcgtttcataatttgacggatgag
ggctatccgcccgcaatggcgaaaatattcgccgcgcgcggcatcgaaaataaggtgcaa
cttgacgcgactttcgcgcaccttgtctcgtttgagtatttgaaaaacgccaagaccatg
gccgtcatgctggccgatgcaatcgcggcgcgaaaaaaactgctggtcattgccgattac
gattgcgatggcgcgacagcctgtgcggttgcggtgcgcggtttacgcgcgtttggtgca
agcattgattttatcgtgccgaaccgtttcgaatacggctatggtctcacgcctgagatt
gttcagctcgcccatgaatcaaaacccgatattctgctcacggtcgataacggcatcgcg
agcgtggacggcgtagcggcggcgaacaggctcggcatgcaggtgttcgtgaccgaccat
catttgccgggtgatatgctgcccgatgcggcctgtatcgtgaatcccaatcagccgggc
tgcgagttccccagtaaacatctggctggcgtaggcgtgattttctacgtattactggcc
ttgcgcgccgaattgcgcaatcgcgggcagctgaccgaagctcaggggcgggcattgccg
gaactgctcgatttggttgcgctgggcacggtcgccgatgtggtcaggttagatcagaat
aaccgcattctggtgcaacaagggctgttgcgcatccgtgccggtcgcgcctgcaaaggc
atcagtgcgctgttgcaagtctctaaaaagtcgccggaaaaaattgtcagcctcgatctt
ggatttaccgtaggtccgaggcttaatgcggcggggcggctcgatgacatgagtctgggg
atcaacgggctgctgaccgatgatgagggcgttgcaatgggcattgccacccagctcgac
acgctcaaccgcgaacggcgcagtatcgagacggacatgcaggaaggcgcactggcggtg
ctcgatacggtcaatccgcaggataattttagcctgactttattcgatgaaagctggcat
cagggagtgatcgggattctggcctcgcgtctgaaggataaatttcaccgtccggtgatt
gcttttgcccaggcgaatagcggcgagctcaaaggttcggggcgctccatcgcaggattg
catttgcgcgatgcgctcgatctggtcagcaaacgctcgcctacactgatcaagaaattt
ggcggtcatgccatggccgccggactctctatcgatgcggctgatttcgacgcctttgtc
gcggcttttgaacaggtcgccagtgagctgctgacgccgaatgacttattgcaacgcatc
gaaaccgacggtccgctcgattcatcgggtctgaccttggaagctgcgcgacttttggat
gagcaggtctgggggcagggctttcctgcgccccaatttgacgacgatttcgaagtgctg
aatcagcgcgtggtcggtgaaaaacacctgaaactgcaactggccaccgatgaggggcaa
tcgatcgatgcgattttgttcgggcacaacgagccgctgccggaattcatacacgctgtg
tacagtttaagtatcaacgaatacaagggtgcgcaaacgctgcagttgatcgtgcggcat
tgggagtag
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