Gallionella capsiferriformans: Galf_2085
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Entry
Galf_2085 CDS
T01295
Name
(GenBank) ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
gca
Gallionella capsiferriformans
Brite
KEGG Orthology (KO) [BR:
gca00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gca03016
]
Galf_2085
Enzymes [BR:
gca01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Galf_2085
Transfer RNA biogenesis [BR:
gca03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Galf_2085
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
ADL56090
UniProt:
D9SI00
LinkDB
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Position
2263161..2265113
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AA seq
650 aa
AA seq
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MNILYEEDGSFKVGSIMTDNTSSLQIESLSGKRSKIKAANVMLQFTQPEMSHFIPQAETL
AADIEVEFLWECCPAEEFGFEDIATEYFGHKPSSLEAAATLIRLHSAPIYFHKKGRGRYR
AAPPDVLKAALAGAEKKRQAQALQARMTEQLIRFELPAEFRDHLNQMLYNPDRNTLEVKA
LEAACAATHISAPHLLHRCGALPSTQDYHFQKFLFENFPKGTGFPAIELSTWDELPMGAI
NAFSIDDATTTEIDDAFSVEKLPNGNWRIGVHIAAPALGMPRDSDGDKLAASRLSTVYMP
GSKITMLPDSVVEAFTLSADRVCPALSMYIEVDAETLDILSYESRVERVHIAANLRHDTL
EPLFNETTLAEGRLDYPYAAELALLWELVQKMEIGRGKADNNTQLDYNFHIENDHVTISN
RRRGSPIDKVVSELMILVNCEWGKHLAEHGFPGIYRTQQGGKVRMSTVAAPHQGLGVAQY
MWSSSPLRRYVDMVNQRQIIAMLRDDPAPYPKNDTGLYAILRDFDTTYSTYNEFQCNMER
YWCLRWLQQENIELIEATVIKENLVRMSDIPLVFRAPSLPEQLPSKTRVQLAVTGIDLLD
LSILTRYVATLATGDGIQTEEDADLSEAESAAPEAAVADIATPPAGETAC
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atgaatatcctttacgaagaagacggcagtttcaaggtcggcagcatcatgaccgacaac
accagttcactgcagatcgaaagcctgtccggcaagcgcagcaagatcaaggcggccaat
gtgatgttgcaatttacccagcctgagatgagccattttatccctcaggctgaaacgctc
gcagctgacatcgaggtggaatttctctgggagtgctgccctgctgaggaattcggcttc
gaagacattgccaccgagtatttcggtcataaaccgagctcactggaagcggcagccaca
ctgatccgcctgcacagcgcgccgatctattttcacaagaaaggccgtggccgctatcgc
gcagccccgcccgacgtgctgaaagcggcgctggcaggtgccgagaaaaaacgccaggcg
caggccctgcaggcgcgcatgacggaacaactgatccgctttgagttgcccgccgagttt
agagatcatctcaatcagatgctctacaaccccgaccgcaacacgctggaagtcaaggcg
ctggaagcggcctgtgccgcgacgcatatcagcgcccctcacctcttgcatcgctgcggc
gcgctgccctccacacaggactaccacttccagaaatttttgttcgaaaatttcccgaag
ggcaccggctttcctgccattgaactctcgacatgggacgaattgccgatgggagcaatc
aatgcattcagcatcgatgacgcgaccaccaccgaaattgacgatgcgttctcggtggaa
aaactgcccaacggtaactggcgcatcggcgtgcatatcgccgccccggcccttggcatg
ccgcgcgactcggacggcgacaaactggccgcctcccgactctccacggtgtatatgccc
ggttcgaaaatcaccatgctgcccgacagcgtggtggaggcctttacgctgagcgccgat
cgcgtctgtcctgcgctatcgatgtacatcgaagtcgatgccgaaacgctagatatcctc
agttatgaaagccgcgtcgaacgcgtgcatatcgccgccaacctgcgtcacgacacgctc
gaaccgctgttcaacgagaccacgctggcagagggccgcctcgactacccctatgcggcc
gaactggcgctgctctgggaacttgtgcaaaaaatggaaatcggccgcggcaaagcggac
aacaacacccagctggactacaacttccacattgagaatgatcatgtcaccatctccaac
cgccgtcgcggctcacccatcgacaaggtggtctcggagttgatgattctggtcaactgt
gaatggggaaaacatctggccgaacacggcttccccggcatttaccgcacccagcagggc
ggcaaagtcaggatgagcacggtggcagcgccccatcagggtttaggcgttgcacaatac
atgtggtcgagctctcccctgcgccgctatgtcgatatggtaaatcagcgtcagatcatc
gccatgctgcgcgacgatcccgcgccgtatccaaagaacgacaccggcctgtatgccatc
ctgcgcgacttcgataccacctattcgacctataacgaattccagtgcaacatggaacgc
tactggtgtctgcgctggttgcaacaggaaaatatcgaactgatagaggcgaccgtcatc
aaggaaaatctggtcagaatgagcgacattccgctggtattccgcgccccttccctgcct
gaacaactgccgtctaaaacccgcgtacaactggcggtcacagggattgatctgctcgat
ctgtcgatactgacccgctatgtggcaacgctcgcaaccggcgatggcatccagactgaa
gaggacgccgacctcagcgaagctgaatcggccgcacctgaagcggccgttgccgacatt
gcgacacctcccgccggggagaccgcttgctag
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