Gallionella capsiferriformans: Galf_2447
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Entry
Galf_2447 CDS
T01295
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
gca
Gallionella capsiferriformans
Pathway
gca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Galf_2447
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gca03021
]
Galf_2447
03019 Messenger RNA biogenesis [BR:
gca03019
]
Galf_2447
Transcription machinery [BR:
gca03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Galf_2447
Messenger RNA biogenesis [BR:
gca03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Galf_2447
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
NACHT
S1CSD-TOTE-2
Mor
AAA_22
AAA_19
Motif
Other DBs
NCBI-ProteinID:
ADL56446
UniProt:
D9SK34
LinkDB
All DBs
Position
2644326..2645582
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AA seq
418 aa
AA seq
DB search
MHLSEIKLKHITELVEMAAANQIENANRMRKQDLMFALLKSHAKKGESIYGDGTLEILPD
GFGFLRSPDTSYLAGPDDIYVSPSQIRRFNLHTGDSIEGEIRTPKDGERYVALVKVDKVN
DEPPENAKNKILFENLTPLFPTRPLILERDIRAEENITGRVIDIVAPIGKGQRGLLVASP
KSGKTVMLQHIAHSISANNPDATLIVLLIDERPEEVTEMTRTVRGEVVASTFDEPASRHV
QVAEMVLEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHRPKRF
FGAARNIEEGGSLTIIATALVDTGSRMDDVIYEEFKGTGNMEIHLDRRMAEKRIYPAINI
NRSGTRKEELLLKPDVLQRIWLLRKLLYPMDELESMEFLLGKIKATKNNAEFFDSMRR
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgcatctatctgaaatcaaattaaaacacatcaccgaactcgttgaaatggcagccgcc
aatcaaatcgagaacgccaaccgcatgcgcaagcaagacctgatgttcgcactgctgaaa
agccatgcgaaaaaaggcgagagcatttacggcgacggtacactggaaattctgccggac
ggcttcggattcctgcgctcccctgacacttcgtaccttgcaggcccggacgatatttat
gtcagtccgagtcagatacgccggtttaatctgcataccggcgattcgatcgaaggcgaa
attcgcactccgaaggatggcgagcgttatgttgcgctggtgaaggttgacaaggtcaac
gacgaaccgccagaaaacgccaagaacaagattctgtttgagaatttgacaccgctgttt
ccaacccggccgctgatcttagagcgcgatatccgcgccgaagaaaatatcaccggccgc
gtcatcgatatcgtggcacctatcggcaagggtcagcgcggtctgttagtcgcctccccg
aaatccggcaaaacggtcatgctgcagcacatcgcacattcaatctcagccaacaatccc
gatgccaccttgatcgtactgctgatcgacgagcgccctgaagaagtaaccgaaatgacc
cgcaccgtgcgcggcgaagtggttgcctcaacattcgatgaaccagccagtcgccacgta
caagtagctgaaatggtgctggaaaaggccaagcgcttagttgagcacaaaaaagatgtc
gtcattttgctcgattcgatcactcgtctggcgcgcgcctacaatacggtgatcccatcc
tccggcaaggtattgaccggcggcgtggatgccaatgcgctgcatcgcccgaaacgtttc
ttcggcgcggcacgcaacatcgaagaaggcggctcgttgaccatcatcgcaacggcgctg
gtcgataccggctcccgcatggacgatgtgatctacgaagaattcaagggcaccggcaat
atggaaatccatctggatcgccgcatggccgaaaaacgcatttatccggcgatcaacatc
aaccgctcgggcacccgcaaggaagaattactgctcaagcctgacgtactgcaacgcatc
tggctattgcgcaaattgctctacccgatggacgaactcgaatcgatggaatttttactc
ggaaaaatcaaggcaaccaaaaacaacgccgagttcttcgactcgatgcgccgttaa
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