Gallionella capsiferriformans: Galf_2467
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Entry
Galf_2467 CDS
T01295
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
gca
Gallionella capsiferriformans
Pathway
gca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Galf_2467
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gca03019
]
Galf_2467
Enzymes [BR:
gca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Galf_2467
Messenger RNA biogenesis [BR:
gca03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Galf_2467
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UTP25_NTPase-like
UvrD-helicase
P-loop_SecA
AAA_22
UvrD_C
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ADL56466
UniProt:
D9SK54
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All DBs
Position
2661968..2663482
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AA seq
504 aa
AA seq
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MPNTITASPVTFASLNLAEPIMRAIADAGYTQPTPVQAQAIPLVLAGGDLLAGAQTGTGK
TAGFTLPVLHLLNSRPAANPGAGRPRCLILTPTRELAAQVEESVQTYGKYLSLKSLVMFG
GVNINPQIKSLRGQVDILVATPGRLLDHVGQKTLDLSAVEILILDEADRMLDMGFIRDIK
KILALLPKTRQNLLFSATFSEEIKTLSDGLLNNPGFVEVARRNTTSELVAQTVHMVAQKL
KSHLLSHLIKHNDWKQVLVFTRTKHGANRLAEKLNADGIPAAAIHGNKSQSARTKALSQF
KDGTMPVLVATDIAARGLDIDMLPHVVNFELPNVPEDYVHRIGRTGRAGSNGAAISLVDS
EELQHLKDIERLIKTQIPRIAIDSFVPPTHIPPEAPRPPRPQHGQKRHSNTTARPPREGQ
APRDGNRPPREGQGPTGNRAPRDPQARTQPPRGPQSTGQPRPAQKPRSAQSTPKPQPLLS
EAARHQAMPQPALFSPRPAARRGK
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
ttgccaaacacaattaccgcctcacccgttacctttgccagcctcaatctggctgaaccc
atcatgcgcgccattgctgacgccggttacacgcaacccacccccgtacaggcacaggcg
ataccgctggtgctcgccggcggcgatttgctggccggcgcgcagaccggcacaggtaaa
accgcaggctttaccctgccggtcttacatctgctcaacagtcgtcccgccgctaatccc
ggtgctggtcgcccgcgctgcctgattctgacgccgacgcgcgaacttgccgcccaggtc
gaagaatcggtacagacctacggaaaatacctgtcgctcaaatccttagtgatgttcggc
ggggtcaacatcaatccgcaaattaaatcattacgcggtcaagtggacattctggtcgca
acacccggtcgcctgctcgatcacgtcggacaaaaaacgctggatttatccgctgttgaa
atcctgattctggacgaagccgaccgcatgctggatatgggttttatccgcgacatcaaa
aagatactcgcgctgctgcctaaaacgcgccaaaacctgttgttttccgcgacgttctcc
gaagaaatcaagacgctgtctgacggactgctcaacaatccgggcttcgtcgaagtcgca
cgccgcaacaccacctcggaactggtcgcacaaaccgtccatatggttgcgcaaaaacta
aaaagccatttgctctcccacctgatcaagcacaatgactggaagcaggtgctggtgttt
acccgcaccaagcacggcgcaaaccgtctggcagagaaactcaatgccgacggcattccc
gctgccgcgatccacggcaacaagagccaatcggcacgcaccaaagccttgtcgcaattt
aaggacggcacaatgcccgtgctggttgcaaccgacatcgcagcccgcggtctcgatatc
gacatgctgccccacgtggtcaattttgaactgccgaatgtacccgaagactatgtacac
cgcatcggtcgtaccggacgcgcaggcagcaatggcgcggcgatttcactggtagacagc
gaagagttgcaacatttgaaagacatcgaacgcctgatcaagacacagattccaagaatt
gccattgacagcttcgtgccgcctacccacattccgcctgaagcaccgcgccctccccgc
ccgcagcacggccagaaacgccacagcaacaccacggcccgtccgccgcgtgaaggacaa
gcgcctcgcgatggcaaccgcccgccgcgcgaaggtcaggggccaaccggcaatcgagca
ccacgcgacccgcaagcacgaacacagccgccacgcggcccgcaatcgacaggtcaacct
cgtccggcgcaaaaacctcgctccgcccaatcgacaccgaagccgcaacctttgctgtct
gaagccgcccgccatcaggctatgccgcaacctgcactgttttcaccccgtcctgcggca
agacgcggcaaataa
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