KEGG   Gymnodinialimonas ceratoperidinii: KYE46_12495
Entry
KYE46_12495       CDS       T08063                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
gce  Gymnodinialimonas ceratoperidinii
Pathway
gce03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:gce00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    KYE46_12495 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:gce03400]
    KYE46_12495 (ligD)
Enzymes [BR:gce01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     KYE46_12495 (ligD)
DNA repair and recombination proteins [BR:gce03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     KYE46_12495 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S RNA_ligase
Other DBs
NCBI-ProteinID: QXT38749
UniProt: A0A8F6TV60
LinkDB
Position
2591097..2593559
AA seq 820 aa
MAYTPDRLATYNTKRDFEQTEEPRGQVGSGAGGYRFIVQKHAASRLHYDFRLEWDGVLLS
WAVTKGPSPAPSEKRLAVRTEDHPLDYGNFEGTIPKGQYGGGTVMLWDDGTWAPQGDVAA
GLKEGKLKFTLQGTHMKGGWTLVRMRGKEKRENWLLIKERDDYAEDRPNALIEGEAISVK
TGRTMAEIAEDAPAKELPDTTPKRRRKRPAFVKPQLATLVSDAPSGEDWMHETKFDGYRC
LASIGKGGVQLFTRSGKDWTDRFHGLAHAFDALPCDAALLDGEVMAARIEGSAFSSLQSA
LKTGAPLVFFAFDLLSLDGKDFRKEGQMDRRERLAKLLSGAPQGGPLRLSEHVLGSGPEV
FERACKAGAEGIISKRIDAPYRGRRSKSWLKVKCTRRQEFVIVGYSPSDKKGRPFASLLL
ASHEGDTLRFKGRVGTGFSQDMMSELAREMTPRKTPPAEGTPDEIARTAKWVRADLVAEI
DFTEFTADGHIRHGSFIGLRHDKPASAVRLEQPKKDIPTMESKVAGVRISNADRQVYPEA
GCTKGDVARHYETVGERMIELAGHRPLSLFRCPSGIDGQCFFQKHDNGGMPDSLSKIAIE
ESDGDEADYLYATRPESLIAAAQMGSIEAHIWGARVDRLDRPDRLVFDLDPDEGMDWPRV
RDAAFEVRDALAELGLRSGAIVTGGKGVHVWMALRRTRGWDTVKLFSQTFAHVIAGHSPD
RYTATMSKAKRRDRIFIDWLRNERGSTAVAPYSLRARPGAPVAVPVTWDELKTLDAPNRF
SLGDMKARMKQDCPALAVQEDLQSLTNDVVAALQDWAAQD
NT seq 2463 nt   +upstreamnt  +downstreamnt
atggcttatactcccgacagactggcaacctacaacaccaagcgcgacttcgaacagacc
gaggagccgcgcggtcaggtcggctcgggcgcgggcggctatcgcttcatcgtgcaaaaa
cacgcggcctcgcggttgcactacgatttccgcctcgaatgggacggcgtgctgctgagt
tgggccgtcaccaagggcccctcgcccgccccatccgaaaagcgcctcgcggtccggacc
gaggatcatccgctggactatggcaacttcgagggcacgatccccaaggggcaatacggc
ggcggcaccgtgatgctttgggacgatggcacctgggcgccgcaaggcgacgtggcggcg
gggctgaaggaaggcaagctgaagtttaccctgcaaggtacgcacatgaagggcggctgg
accctcgtgcggatgcgcggcaaggaaaagcgcgagaactggctgctgatcaaggagcgt
gacgactacgccgaggatcgccccaacgcgctgatcgagggcgaggcgatctcggtcaag
accgggcgcaccatggcggaaatcgccgaggacgcccccgccaaggagttgcccgatacc
acccccaagcgccgccgcaagcggcccgctttcgtcaaaccgcagctcgccacgctggtg
agcgacgccccctcgggcgaggattggatgcacgagacgaagttcgacggctaccgctgt
ctggcctccatcggcaagggcggcgtgcagttgttcacccgctccggcaaggattggacc
gaccgcttccacgggctggcccatgccttcgatgccctgccctgtgacgccgcgctgctt
gatggagaggtcatggccgcccggatcgaggggtcggccttttcgtcgttgcaaagcgcc
ctcaagaccggcgcgcccctggtgtttttcgctttcgacctgctctcgctcgatggcaag
gatttccgcaaggagggccagatggatcgccgcgagaggctagcgaaactgctgagcggg
gcgccacagggtggcccgctgcggttgagcgagcatgttctgggcagcggacccgaggtt
ttcgagcgtgcctgcaaggccggtgccgaggggatcatcagcaagcgcatcgatgcgccc
tatcggggacgacgctcgaagtcctggctcaaggtgaaatgcacccgtcggcaggaattc
gtcatcgtgggatattcgccctcggacaagaaagggcggcccttcgcctcgctgctactg
gcgagccacgagggcgacacgctccgcttcaagggccgcgtcgggaccggtttttcgcag
gacatgatgagcgagctggcgcgcgagatgacgcctcgcaagaccccgcccgccgaaggc
acgccggacgagatcgcccgcaccgcgaaatgggtgcgcgccgatttggtggcggagatc
gacttcaccgaattcaccgccgatggccatatccgccacggcagcttcatcgggctgcgg
cacgacaaacccgccagcgcggtgcggctggagcaacccaagaaggacattcccaccatg
gaaagcaaggtcgccggggttcggatcagcaacgcggaccggcaggtctaccccgaggcc
ggatgcaccaagggcgacgtggcccgccattacgagaccgtgggcgagcggatgatcgag
ctggcaggacaccgcccgctgtcgctcttccgctgtccgtcgggcatcgacgggcagtgt
ttcttccagaagcacgacaacggcgggatgccggacagcctctcgaagatcgcgatcgag
gagagcgacggcgacgaggccgattacctctatgccacccggcccgagagcctgatcgca
gcggcgcagatgggcagcatcgaggcgcatatctggggcgcgcgggtcgacaggctcgac
cggccggaccggctggtgttcgatctcgaccccgacgaagggatggattggccaagggtg
cgcgatgccgccttcgaggtgcgcgacgcgctggccgagcttggcctgcgctccggcgcg
atcgtgaccgggggcaagggcgtacatgtctggatggccctgcggcgtacgcgcgggtgg
gacacggtgaagctgttctctcagaccttcgcccatgtgatcgccggccattctccggac
cgctataccgcgacgatgtccaaggccaaacggcgggaccggatcttcatcgactggctg
cgcaatgagcggggatcgacagcggtggccccctactccctccgcgcccgccccggcgcg
ccggtggcggtgccggtgacatgggacgagttaaagaccctcgacgcgccaaaccgcttc
agcctcggggacatgaaagcgcggatgaagcaggattgccccgcgctggcggtgcaggaa
gacctgcagtccctgaccaacgacgtggtggccgcattgcaggattgggccgcgcaggat
tag

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