Gymnodinialimonas ceratoperidinii: KYE46_12495
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Entry
KYE46_12495 CDS
T08063
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
gce
Gymnodinialimonas ceratoperidinii
Pathway
gce03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
gce00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
KYE46_12495 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gce03400
]
KYE46_12495 (ligD)
Enzymes [BR:
gce01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
KYE46_12495 (ligD)
DNA repair and recombination proteins [BR:
gce03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
KYE46_12495 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QXT38749
UniProt:
A0A8F6TV60
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All DBs
Position
2591097..2593559
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AA seq
820 aa
AA seq
DB search
MAYTPDRLATYNTKRDFEQTEEPRGQVGSGAGGYRFIVQKHAASRLHYDFRLEWDGVLLS
WAVTKGPSPAPSEKRLAVRTEDHPLDYGNFEGTIPKGQYGGGTVMLWDDGTWAPQGDVAA
GLKEGKLKFTLQGTHMKGGWTLVRMRGKEKRENWLLIKERDDYAEDRPNALIEGEAISVK
TGRTMAEIAEDAPAKELPDTTPKRRRKRPAFVKPQLATLVSDAPSGEDWMHETKFDGYRC
LASIGKGGVQLFTRSGKDWTDRFHGLAHAFDALPCDAALLDGEVMAARIEGSAFSSLQSA
LKTGAPLVFFAFDLLSLDGKDFRKEGQMDRRERLAKLLSGAPQGGPLRLSEHVLGSGPEV
FERACKAGAEGIISKRIDAPYRGRRSKSWLKVKCTRRQEFVIVGYSPSDKKGRPFASLLL
ASHEGDTLRFKGRVGTGFSQDMMSELAREMTPRKTPPAEGTPDEIARTAKWVRADLVAEI
DFTEFTADGHIRHGSFIGLRHDKPASAVRLEQPKKDIPTMESKVAGVRISNADRQVYPEA
GCTKGDVARHYETVGERMIELAGHRPLSLFRCPSGIDGQCFFQKHDNGGMPDSLSKIAIE
ESDGDEADYLYATRPESLIAAAQMGSIEAHIWGARVDRLDRPDRLVFDLDPDEGMDWPRV
RDAAFEVRDALAELGLRSGAIVTGGKGVHVWMALRRTRGWDTVKLFSQTFAHVIAGHSPD
RYTATMSKAKRRDRIFIDWLRNERGSTAVAPYSLRARPGAPVAVPVTWDELKTLDAPNRF
SLGDMKARMKQDCPALAVQEDLQSLTNDVVAALQDWAAQD
NT seq
2463 nt
NT seq
+upstream
nt +downstream
nt
atggcttatactcccgacagactggcaacctacaacaccaagcgcgacttcgaacagacc
gaggagccgcgcggtcaggtcggctcgggcgcgggcggctatcgcttcatcgtgcaaaaa
cacgcggcctcgcggttgcactacgatttccgcctcgaatgggacggcgtgctgctgagt
tgggccgtcaccaagggcccctcgcccgccccatccgaaaagcgcctcgcggtccggacc
gaggatcatccgctggactatggcaacttcgagggcacgatccccaaggggcaatacggc
ggcggcaccgtgatgctttgggacgatggcacctgggcgccgcaaggcgacgtggcggcg
gggctgaaggaaggcaagctgaagtttaccctgcaaggtacgcacatgaagggcggctgg
accctcgtgcggatgcgcggcaaggaaaagcgcgagaactggctgctgatcaaggagcgt
gacgactacgccgaggatcgccccaacgcgctgatcgagggcgaggcgatctcggtcaag
accgggcgcaccatggcggaaatcgccgaggacgcccccgccaaggagttgcccgatacc
acccccaagcgccgccgcaagcggcccgctttcgtcaaaccgcagctcgccacgctggtg
agcgacgccccctcgggcgaggattggatgcacgagacgaagttcgacggctaccgctgt
ctggcctccatcggcaagggcggcgtgcagttgttcacccgctccggcaaggattggacc
gaccgcttccacgggctggcccatgccttcgatgccctgccctgtgacgccgcgctgctt
gatggagaggtcatggccgcccggatcgaggggtcggccttttcgtcgttgcaaagcgcc
ctcaagaccggcgcgcccctggtgtttttcgctttcgacctgctctcgctcgatggcaag
gatttccgcaaggagggccagatggatcgccgcgagaggctagcgaaactgctgagcggg
gcgccacagggtggcccgctgcggttgagcgagcatgttctgggcagcggacccgaggtt
ttcgagcgtgcctgcaaggccggtgccgaggggatcatcagcaagcgcatcgatgcgccc
tatcggggacgacgctcgaagtcctggctcaaggtgaaatgcacccgtcggcaggaattc
gtcatcgtgggatattcgccctcggacaagaaagggcggcccttcgcctcgctgctactg
gcgagccacgagggcgacacgctccgcttcaagggccgcgtcgggaccggtttttcgcag
gacatgatgagcgagctggcgcgcgagatgacgcctcgcaagaccccgcccgccgaaggc
acgccggacgagatcgcccgcaccgcgaaatgggtgcgcgccgatttggtggcggagatc
gacttcaccgaattcaccgccgatggccatatccgccacggcagcttcatcgggctgcgg
cacgacaaacccgccagcgcggtgcggctggagcaacccaagaaggacattcccaccatg
gaaagcaaggtcgccggggttcggatcagcaacgcggaccggcaggtctaccccgaggcc
ggatgcaccaagggcgacgtggcccgccattacgagaccgtgggcgagcggatgatcgag
ctggcaggacaccgcccgctgtcgctcttccgctgtccgtcgggcatcgacgggcagtgt
ttcttccagaagcacgacaacggcgggatgccggacagcctctcgaagatcgcgatcgag
gagagcgacggcgacgaggccgattacctctatgccacccggcccgagagcctgatcgca
gcggcgcagatgggcagcatcgaggcgcatatctggggcgcgcgggtcgacaggctcgac
cggccggaccggctggtgttcgatctcgaccccgacgaagggatggattggccaagggtg
cgcgatgccgccttcgaggtgcgcgacgcgctggccgagcttggcctgcgctccggcgcg
atcgtgaccgggggcaagggcgtacatgtctggatggccctgcggcgtacgcgcgggtgg
gacacggtgaagctgttctctcagaccttcgcccatgtgatcgccggccattctccggac
cgctataccgcgacgatgtccaaggccaaacggcgggaccggatcttcatcgactggctg
cgcaatgagcggggatcgacagcggtggccccctactccctccgcgcccgccccggcgcg
ccggtggcggtgccggtgacatgggacgagttaaagaccctcgacgcgccaaaccgcttc
agcctcggggacatgaaagcgcggatgaagcaggattgccccgcgctggcggtgcaggaa
gacctgcagtccctgaccaacgacgtggtggccgcattgcaggattgggccgcgcaggat
tag
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