Gymnogyps californianus (California condor): 127014061
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Entry
127014061 CDS
T08687
Name
(RefSeq) DNA mismatch repair protein Msh2 isoform X1
KO
K08735
DNA mismatch repair protein MSH2
Organism
gcl
Gymnogyps californianus (California condor)
Pathway
gcl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gcl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
127014061
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gcl03400
]
127014061
DNA repair and recombination proteins [BR:
gcl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
127014061
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
AAA_27
Motif
Other DBs
NCBI-GeneID:
127014061
NCBI-ProteinID:
XP_050749054
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Position
3:complement(17838808..17893492)
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AA seq
886 aa
AA seq
DB search
MAVEPPREVVWPEGAGAEAGFVRAVLSLPEKPDTTVRFFERGDYYTAHGADARLAARELF
RTRAVIRQLAGAPGTQKLESVVLSKMNFESFVRDLLLVRHYRVEVYKNKAGSKSIKENDW
YLAYKGSPGNLTQFEEVLFANNDMSTAIGVVGVKLSTTDGQRVVGVGYVDTTLRKLSVCE
FPDNDQFSNLEALLVQLGPKECVLPGGETAGEMGKLRQVIQRGGILITDRKKADFTTKDI
VQDLNRLLKSKKEEQMNSAALPEMEKQSSVENANTAQSLAGLLNKCRTPQGQRLVNQWIK
QPLMDKNRIEERLNLVEAFVVDPELRQCLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRM
YQAINQLPNVVQALEKHEGAHQMLLLAVFITPLNDIYSDFSKFLEMIETTLDMDKVENHE
FLVKASFDPNLTELREKMNELEEKMQSFLKSAAKELGLEAGKSIKLETNSQFGHHFRITC
KEEKVLRNNSKYGIVDTQKNGVKFTNSKLSSVNDEYIKNREEYEEAQDAIVKEIINIASG
YAEPIQTMNDVIAQLDAIVSFAHVSNGAPVPYVRPVILEKGQGRIVLKGARHPCIEVQDE
VAFIPNDITFEKGKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCDSAEITVVDC
ILARVGAGDSQLKGVSTFMAEMLETASILRTASENSLIIIDELGRGTSTYDGFGLAWAIS
EYIASKIRAFCMFATHFHELTALADQVPTVNNLHVTALTSDDTLTMLYRVKEGVCDQSFG
IHVAELAAFPKHVIESAREKALELEEFQNIGKSKESEGEPPAKKFYREREEGEKVIQDFL
CQVKALPLTDMSEEDIKIKLKQLRNDVLAKNNSFVNEIISRTKVKS
NT seq
2661 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggagccgccgcgggaggtggtgtggccggagggcgcgggggccgaggcgggc
ttcgtgcgcgccgtgctctcgctgcccgagaagcccgacaccaccgtgcgcttcttcgag
cgcggcgactactacacggcgcacggcgcggacgcgcggctggccgcccgcgagctcttc
cgcacccgcgccgtcatccgccagctggcgggggcaccgggaactcagaagcttgagagt
gttgtgcttagtaaaatgaactttgaatcttttgtgagagatctgcttctggttcgtcat
tacagagtagaagtttacaagaacaaagcagggagtaaatctatcaaagaaaatgactgg
tatttagcatacaagggttctccaggaaatcttacccagtttgaggaagttctctttgcc
aacaatgatatgtcaacggccattggggttgtgggggttaagctgtctactactgatgga
caaagagtagtaggagtgggttatgtcgacactacgctgagaaaattgagtgtctgtgag
tttccagataatgatcagttctcaaaccttgaagctctactggttcaactaggaccgaag
gagtgtgtgctaccaggaggagagactgcaggagagatgggaaaactacgacaagtcatt
cagaggggaggaatcctgattacagacagaaagaaggcggatttcacaacaaaagatatt
gttcaggatctcaatcgcttgttaaaatcaaaaaaagaagaacaaatgaatagcgcagca
ttgccagagatggaaaagcagagttctgtggaaaatgctaatactgcacagtctctagct
ggtttactaaataaatgcaggacccctcaaggacaaagactagttaatcagtggatcaaa
caaccgcttatggacaagaacagaattgaagaaaggttgaatttggttgaagcttttgtg
gtggatccagaactacgtcagtgccttcaagaagatctcttacgtcgcttcccggatctt
aaccggctggcgaagaaatttcagagacaagcggcaaacttacaggactgttaccgaatg
taccaggctattaatcaactgcctaatgttgtacaagcactagaaaaacatgaaggagct
caccagatgttgttgttggcggtgtttataacacctcttaatgatatctactctgacttc
tcaaagtttctggagatgatagaaacaacattggacatggataaggtagagaatcatgaa
tttcttgtcaaggcttcttttgatcctaatttgacagaattaagagagaagatgaatgaa
ctggaagaaaaaatgcagtcctttttaaagagtgcagccaaagaactaggtttggaagct
ggcaaaagtatcaaactggagacaaattcacagtttggacatcactttcgaataacttgc
aaggaggaaaaagttctccgtaacaattcaaaatatggaatagttgatacacagaagaat
ggtgtgaaatttactaacagcaaactgagctccgtcaatgacgaatatataaagaacagg
gaagagtatgaagaggctcaggatgcaattgttaaggaaatcattaacattgcttcaggt
tatgcagaaccaatacagacaatgaatgatgtgatagctcaactagatgcaattgtcagt
tttgctcatgtgtcaaacggagcaccagtgccgtatgtccgtcctgtcattctggaaaag
ggacaaggaagaattgtgctgaaaggtgccaggcatccttgcatcgaagtgcaagatgag
gtggctttcatccccaatgacattacgtttgagaagggcaagcagatgttccacattatt
actggccctaacatggggggaaagtcaacctacatccgacagacaggggtgattgttctt
atggcccaaattgggtgttttgtaccatgcgactctgcagaaataactgttgtggattgt
atcctggctcgagtgggagctggagacagtcagctgaaaggcgtgtctacttttatggct
gaaatgttagaaactgcttcaatccttaggacagcatctgaaaactccctaataatcatt
gatgagctgggaagaggaacttctacctatgatggctttggcttagcatgggctatttca
gaatacattgctagcaaaatccgtgctttctgtatgtttgctacacattttcatgaactg
acagctcttgctgaccaagtgccaacagtaaataacctacatgttactgctctgaccagt
gacgacacactgacgatgctttatcgtgtcaaggaaggtgtttgtgaccagagttttgga
atacatgtagcagagttggcggctttcccaaaacatgtgatagaaagtgcaagagagaaa
gcattggagctggaggagtttcaaaacattggcaagtccaaggaatctgaaggagaacca
ccagccaagaaattctacagagaaagagaggaaggtgaaaaggtaattcaggattttctt
tgtcaagtgaaagcactgcccctgacagatatgtcagaagaagacatcaaaatcaagctg
aaacagctgagaaatgatgtgttggcaaagaacaacagttttgtgaatgaaatcatttcc
cgaacgaaagttaaatcataa
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