Gymnogyps californianus (California condor): 127014645
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Entry
127014645 CDS
T08687
Name
(RefSeq) poly(A)-specific ribonuclease PNLDC1 isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
gcl
Gymnogyps californianus (California condor)
Pathway
gcl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gcl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127014645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gcl03019
]
127014645
Enzymes [BR:
gcl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
127014645
Messenger RNA biogenesis [BR:
gcl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
127014645
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
127014645
NCBI-ProteinID:
XP_050750088
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All DBs
Position
3:complement(52823130..52835247)
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AA seq
510 aa
AA seq
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MEFTGLHSTFPQNNEPSSGFVHSLFDSPAERYLKARQSVQRFTVTQLGLAVFSNENSNKY
VVHSYNFFLFPSTLGVTDVELTLSASSIQFLSHYGFDYNKFLKDGIPYMNEVQEKILSQH
LLAGSWKVSSALDRDVLKKAIDEVTCWIAAAEEEETMILQDLSGCQMFEVQLVLRQALQN
VWTQPLGDKKVMVKKVSPQHRRLLENSPYDYCQKELILLSVRGFTNLFQTLVKAKKPLVG
HNMLMDLMHLHDKFYKPLPESYEEFKRNIHNLFPVLVDTKTVTKSIWKKCPFPRASNLLE
VYEVLCSSNLNPQDPTCPVIALASGCSRYAEKKSPHEAGYDAFLCGSVLLKSAHLLLCSS
TDGAVEADPSFSQYLTVLAEYLNKVNFIRGGVSSINFAGEDAPCQHPPLLVVRVQGWPGL
NERQIYQEFKALCRFDVRRLSKNQFILLSNKFKHVRLVLRDYKQHPHLRVSIYRHWRHSP
RVNCLLQVSGIVALWSLLAFVLGGAPCCSF
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
atggagtttactggcttacattccactttcccacaaaataacgagcccagttctggtttt
gttcatagcctgtttgattcccctgcggagcggtacctgaaggccaggcagagcgttcag
cgcttcactgttactcagcttgggctggcagtattctcaaatgaaaattcaaacaagtat
gtggtgcattcatacaacttttttctctttccgtcaacattgggagttacagatgtcgaa
ctcaccctctctgcatctagcattcagttcctgtctcattatggcttcgactataataag
ttcctcaaagatggaatcccttacatgaatgaggtacaggagaagatccttagccagcat
ctcttagcaggtagctggaaagtcagcagtgccctggacagagatgtgctgaagaaggct
attgatgaagtgacctgttggatagctgcagcagaggaagaggagactatgattctgcag
gatctcagtggctgtcagatgtttgaagttcagctggttctgagacaggctctccaaaat
gtttggacacagcctcttggagacaagaaggtaatggtgaaaaaagtgagtccacagcat
cgtcggcttctggagaactctccttatgactactgccagaaggagctcattctcctgtct
gtccggggcttcaccaacctcttccagacacttgttaaagccaagaagcccctggtggga
cacaacatgcttatggaccttatgcatcttcacgacaagttctacaagccccttccagaa
agctatgaggagtttaaaaggaacattcacaacctgtttcctgtcctcgtagacaccaag
actgtaacaaaatccatctggaagaaatgtccgtttcctcgagcatctaatcttttggag
gtgtatgaggttttgtgcagcagcaacctaaatccccaagatccaacgtgcccagtgata
gctcttgcaagtggctgctcaagatacgctgagaagaaatctcctcacgaggcaggctat
gatgcatttctctgtggttcagttcttctgaagtcagctcatttgctactgtgcagttcc
acagatggtgcagtggaggctgatccttctttctctcagtatctcaccgtgttagccgag
tatctgaacaaagtgaatttcatccgaggtggtgtttcaagcattaattttgctggggaa
gatgctccctgccaacatccccctctcttggttgtccgtgtccaaggctggccagggctg
aatgaaaggcagatttaccaagagtttaaagctctttgtcgctttgatgtcagacggctt
tcaaagaaccagttcattctgctctccaataaatttaagcatgtcaggcttgttctgcga
gattataagcagcaccctcatctgcgggtttccatctatcgccactggaggcactctccg
cgcgtgaactgcctgctgcaagtctctggtattgtggcactgtggtctctcttggccttt
gtactcggaggagctccttgctgttcattctaa
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