Gymnogyps californianus (California condor): 127015388
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Entry
127015388 CDS
T08687
Name
(RefSeq) synaptopodin-2 isoform X1
KO
K24066
synaptopodin-2
Organism
gcl
Gymnogyps californianus (California condor)
Pathway
gcl04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gcl00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
127015388
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
gcl04990
]
127015388
Domain-containing proteins not elsewhere classified [BR:
gcl04990
]
PDZ domain-containing proteins
Other PDZ domain-containing proteins
127015388
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
Calsarcin
PDZ_2
Pept_S41_N_bact
Motif
Other DBs
NCBI-GeneID:
127015388
NCBI-ProteinID:
XP_050751202
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All DBs
Position
4:complement(79453545..79547778)
Genome browser
AA seq
1274 aa
AA seq
DB search
MLPNCTRKMGTGDYLCIAMSGGAPWGFRLQGGKEQKQPLQIAKVRSKSKAAKAGLCEGDE
VVSINGKPCGDLTYAEVIVLMESLTDVLQMLIKRSSNGINETLSAEKENGKHDNIKNEDY
RESTTLQIDTAKEIPHGDLCITEIYSETHQGAGESNIDFSEMKQETTQSHRITPKVIGTS
KVLVTDEAAFRGKTEERRPGTMVELQLSLSNDAHKGTNAPAVTLLGAEKCTPSGRGPSVQ
QDGTSPVITIPLGVKEGNIQWSSKVVQLSSGKEVKRIQGAAPSLPRVEVILDCSDREKEA
PRSLAERGCVDSQVEGGQSEAPPSLLSFAISSEGTEQGEDDQHSERDHRPLKHRARHARL
RRSESLSEKQVKEAKSKCKSIALLLTAAPNPNSKGVLMFKKRRQRARKYTLVSYGTGELE
RDEDEGEEGEGEEGEKENTFEVSLLATSESEIDEDFFSDIDNDGKIVTFDWDSGLLEVEK
KTKSGDEMQTLPESTGKGALMFAKRRQRMDQITAEQEEMKARTVHTEERREATMSENFQK
VSSSVYQTKEEEMSRQQTRVSKSYTDVSQNHSKMVQQNGFGLAPDTNLSFRSSEAQKAMS
LNKTAKPFPSGVQNRAAAPFSPTRNVTSPLSDIPAPPPYCSISPPPEALYRPVSAPVASR
AAPTVWSPTEPTEHIASRDERIAVPAKRTGILQEAKRRSTSKPMFTFKETPKVSPNPALL
SLVHNAEGKKGTGAGFESGPEEDYLSLGAEACNFMQTQASKQKGPPPVAPKPSLKVSPTA
GTPVSPVWSPSAAASNKAPSFPAPASPQAAYPAPLKSPQYPHSPAHPPSTLNLAGPFKGP
QATLASPNHTPKTTPVTPSAGGTKPPFEMPPAMSGKGAQLFARRHSRMEKYVVDSETVQA
NMARASSPTPSLPASWKYSSNVRAPPPVAYNPIHCPSYPPAATKPSSKSTAATKNTKRKP
KKGLNALDIMKHQPYQLDASLFTFQPPSTKESVAIKQTSKLSTSKQALPLRPPSAGSPTN
VRASSVYSVPAYSSQPLFQSNASIPLNESYSPTSHSAFSKPETTTSSLFTAPRPKFSAKK
AGVTAQERSSGRSLSLPGRPSSFISRAMSPTSPLMFQPAPDYFSKPDTAANRPGKRPTPW
EAAARSPLGLVDEAFGPQNIQESIAANVVSAARRKTLPEPPDEWKQKVSYEPPAPSGSVA
LLGGKQSGIISPPKSSMSAPSATTQAGSQLQYAYCSQRSRTDPDIMSMDSRSDYCLSTAD
SNYNPQSRGWRRPT
NT seq
3825 nt
NT seq
+upstream
nt +downstream
nt
atgctgcctaactgcaccaggaaaatgggcacaggggattatctctgcattgctatgagt
ggaggggcaccttggggctttagattgcaaggtggcaaggagcaaaagcagcctttgcaa
atcgctaaggttcgcagcaagagcaaagcagctaaggctggactgtgtgagggagatgag
gtggtgtctatcaatggcaagccttgtggagacttaacctatgctgaagttatcgttctg
atggaaagcctgactgacgtcctgcagatgcttatcaagagatcctccaatggaataaat
gaaaccttgagtgctgaaaaagaaaatggaaagcacgataacataaaaaatgaggactat
agggagagtactacactgcaaattgacacagcaaaagagataccccatggagatttatgc
atcacagagatatacagtgagactcaccagggagcaggagaaagcaacatagacttttct
gaaatgaaacaagagaccacacaaagccacagaattactcctaaagtgataggcacctcc
aaagtgctcgtgacagatgaggctgctttcagagggaagacagaagaaagaaggccaggt
actatggttgagctgcagttgtccctctcaaatgacgcgcacaagggcaccaatgctcct
gctgtgactctcttaggggcagaaaaatgcaccccttcaggaagaggacccagtgtacaa
caagatgggactagccctgtaatcacaattcccctgggtgtgaaagagggcaacatccag
tggtcaagcaaagtagtccagctttctagtggcaaagaggtcaagaggatccaaggtgca
gctccatctctccccagggtggaggtgatcctagactgttcggacagggagaaggaagca
cccaggtctctagctgaaagggggtgtgttgattctcaagtggaaggagggcagtcagaa
gcacctccttccctcctctcctttgcaatctcatcagaaggcacagagcagggagaagac
gaccagcactcggaaagggatcacagacctctcaagcacagggcaaggcacgcaaggctc
cggcgaagtgagagtctgtcagagaagcaggtcaaagaagccaaatctaaatgtaaaagt
attgcattgctgctgacagcagctcccaatcccaattccaagggggtgttgatgttcaag
aagcgtcgtcaaagggcgaggaaatatactttagtcagctacggtactggggagttagaa
cgtgacgaagacgagggtgaagaaggtgaaggtgaagaaggggaaaaagaaaacactttt
gaagtgagtttgcttgcaacaagcgagtcagaaatagatgaagatttcttctctgacatt
gacaacgacggtaagattgtgacgtttgactgggacagtggtctacttgaggttgaaaag
aagacaaaaagtggagacgagatgcagacgcttccagagagcacaggtaaaggagccctc
atgtttgccaagagacggcagaggatggatcagattacagctgagcaagaggagatgaag
gcacgcacagtgcatacagaggaacgaagggaagccaccatgtcagagaacttccagaaa
gtaagctcttcagtctatcaaacaaaagaggaagaaatgtcaagacagcagacccgtgtg
agcaaaagctacacagacgtgagtcagaatcatagcaaaatggtacaacaaaatggcttt
ggcttagcaccagacacaaacctctcttttcggtcctctgaagctcaaaaagcaatgtct
ttgaataaaacagctaaacccttcccttctggggttcaaaaccgagcagctgcaccattt
tcacccacaagaaatgtcactagtcctctttcagatataccagcaccacctccttactgc
tctatcagcccaccacctgaggctttatacagacctgtttcagctcctgtagccagcaga
gctgccccaactgtgtggtcacccacagagccaacagaacacatagcatccagagatgaa
aggattgcagtgccagccaaaagaactgggatactgcaagaggcaaagagaagaagcact
tcaaaacccatgttcactttcaaagaaacacccaaagtaagtcctaatcctgccctgctg
tcccttgtgcacaatgcagagggcaaaaaaggtactggagctggttttgagtcaggacct
gaagaagactacctcagtttgggagcagaagcttgcaatttcatgcagactcaagcatct
aaacaaaagggccctcctcctgttgctccaaagccttcactcaaggtctctcctactgct
ggtactccagtttcaccagtttggtcaccttcagctgcggcttctaacaaggctccttct
ttcccagcaccagcctcacctcaggcagcatatcctgcaccactcaaatctccacagtat
cctcattctcctgcccatcccccaagtactctcaacctagctggtcctttcaaagggcct
caggcaaccctagcgagtccaaaccatacacccaagacaacaccagtcacaccaagtgct
ggaggaacaaagccaccctttgagatgccaccagctatgagtggaaaaggagcacagtta
tttgccagaaggcactctcgaatggaaaagtacgtggtagattcagagactgtgcaggca
aacatggcacgagcctcgtctccaactccatccttaccagcttcttggaaatattcatct
aatgtccgagcacctccacctgttgcttataatcccatccactgcccatcttatcctcct
gctgctaccaagccttcctctaagtctactgctgctaccaaaaatacaaaaagaaaacct
aagaaaggtctcaatgctttggatattatgaaacatcaaccttatcaactcgatgcatct
ttatttacttttcaacctcctagcactaaggaaagcgttgctattaagcagacatcgaag
ttgtccacttcaaagcaagctctacctttaagaccacctagtgctggctctcctactaac
gtccgggcatcttcagtgtactccgtgccagcctacagttcacaacctttgttccaatca
aatgcctctatcccactaaatgaatcatattcgcctacaagccactctgcattttctaag
ccagaaaccaccacatcctctttgtttactgctccgaggccaaaattttcagcaaagaaa
gctggcgtcactgcgcaggaaagaagcagtggacggtcattatcacttcctgggagacct
tcttcattcatttctcgagccatgtctcctacttctcctcttatgtttcagcctgcccct
gattacttcagcaagccagacacagcagccaacaggcctggcaagagaccaactccctgg
gaagcagcggcaagatcccctcttggcctagtggatgaagcttttgggccccaaaatata
caggaatccattgctgctaatgtagtatcagctgctcgcaggaaaacacttcctgagcca
ccagatgaatggaaacaaaaagtttcttatgagcctccagccccaagtggtagtgtagcc
ttattaggagggaagcaatcgggtattatatcaccccccaaaagctccatgtctgcccca
agtgccaccacgcaggctggctctcagctgcagtatgcttactgcagtcaacggtccaga
acagatcccgatataatgtccatggattccaggtctgactattgcttgtcaacagctgat
tcaaactacaacccacagtcaaggggatggaggcgtccaacatga
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