Gymnogyps californianus (California condor): 127016057
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Entry
127016057 CDS
T08687
Name
(RefSeq) collagen alpha-1(XXV) chain
KO
K24356
collagen type XXV alpha
Organism
gcl
Gymnogyps californianus (California condor)
Brite
KEGG Orthology (KO) [BR:
gcl00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
gcl00536
]
127016057
Glycosaminoglycan binding proteins [BR:
gcl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
127016057
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
127016057
NCBI-ProteinID:
XP_050752327
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Position
4:complement(58887106..59212179)
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AA seq
746 aa
AA seq
DB search
MGGGGKEIKAAAAEGCKSMLGKSRGAAGRDGSGKLGCGADRCPRRAGPCGSALAALLSAL
AAASCVYLGVRTSDLQARVAAIEGARGGFSAAAPLPPLPGFSLEQLNAMMQEKVERLLAQ
KSYEHLAKIRVAREVPPECNCPPGPPGKRGKRGRRGETGPPGLPGRNGYPGPIGMDGKLG
QPGPQGPPGPKGEKGDQGDQGPRMVFPKINHGFLSADQQLIKRRLIKGDQGQAGPPGPPG
PPGPRGPPGDTGKDGPRGMPGIPGEPGKPGEQGLTGPQGPPGQKGSVGVPGVPGRDGQAG
EPGLPGIVGEKGAAGLKGDPGERGEKGDAGENGPKGDTGEKGDPGSSAAGIKGEPGESGR
PGQKGEPGLPGLPGLPGIKGEPGFIGPQGEPGLPGLPGTKGDRGEAGPVGKGERGEPGVP
GQKGKTGEPGSRGPKGSKGDTGDRGDTGSAGPRGPPGQKGDQGATEIIDYNGNIHEALQR
IATLTVTGPPGPPGPQGLQGPKGEPGSPGTPGVDGEQGPKGSKGDTGDPGMPGEKGGIGL
PGLPGANGMKGEKGDVGLPGAQGPSMIGPPGQPGPHGPPGPMGPHGLPGPKGEPGLNGLK
GLKGEPGQKGDRGPLGLPGASGLDGKPGPRGVDGPAGPHGPAGPKGDRGEKGTVGDPGPR
GPYGLPGKDGEPGLDGFPGPRGEKGDIGEKGEKGEKGKKGKKGPKGEKGEQGAPGLDAPC
PLGPDGLPMPGCWQKGVTPWLIAKKR
NT seq
2241 nt
NT seq
+upstream
nt +downstream
nt
atggggggcggaggaaaggaaatcaaagctgccgcagccgaagggtgtaaaagcatgctg
gggaagagccgaggagccgcaggacgggatggcagcgggaagctcggctgcggcgcggac
cgctgcccgcggcgggccgggccgtgcggttcggcgctggcggctctcctctcggcgctg
gcggcggcctcctgcgtctacctgggggtgcggaccagcgacctccaggccagggtcgcg
gccatcgagggcgcccgagggggcttctctgccgccgccccgctcccgccgctgcccggc
ttttctctggagcagctgaacgcgatgatgcaggagaaagtggagcgacttctcgcccag
aaatcctacgagcacttggcaaaaatacgagtagcgagagaagtgcctccagagtgcaac
tgcccaccaggtcctccagggaaaagaggtaagcggggcagaagaggagagactggacct
cctggtctaccagggcgaaatggctatccgggtccgattggtatggatggaaagctgggt
cagcctggtcctcaaggccctcctggtccaaaaggcgagaagggagatcaaggtgatcag
ggccctcggatggtgtttcctaaaatcaatcacgggtttctctctgctgatcagcagctc
attaaacgccgcctcattaagggggaccaaggacaagctggaccccctgggcctccaggg
ccaccaggacccagaggtcccccaggagataccggcaaagatggtcctcgcgggatgcct
ggcataccgggtgagccaggaaaaccaggagaacagggattgacaggacctcaggggcct
ccaggacaaaagggttctgttggagtgcctggtgttccagggagagacggacaagcgggt
gaacctggtttgcctggcatagtgggagagaagggagcagcagggcttaagggtgaccct
ggagaaagaggagaaaagggtgatgctggagaaaatggaccgaagggtgacacaggagaa
aagggtgaccctggttcttctgctgcaggaattaagggtgaacctggtgaatctggacgg
cctggacaaaagggtgaaccaggtcttcctgggcttcctggactccctgggataaagggt
gaaccaggtttcattggtccgcaaggagaacctgggttgccagggctaccaggaacaaag
ggtgacagaggagaggcaggccctgttgggaagggtgagcgaggcgaacctggagttcct
ggacaaaagggaaaaacaggtgaacctggatctagaggcccaaaagggtcaaagggtgat
acaggtgacagaggtgacacaggatctgcaggtccacggggaccacctggacagaagggt
gatcaaggtgcaacagagataattgattataatggcaatatccatgaagctctgcagagg
attgccactctgactgtcacggggccaccaggaccaccgggaccccaagggctgcaaggg
ccaaagggtgaaccaggatccccaggcactccaggagttgatggggagcagggtcctaaa
ggctcaaaaggagataccggtgatcctggaatgcctggagaaaagggaggaattggactg
cctggcctgccaggagccaatggtatgaaaggtgaaaaaggagatgttggtttgcctggt
gcccaaggtccttcaatgataggaccacctggacaaccagggccacatggtcctccaggc
cctatgggacctcatggactgcctggcccaaagggtgaaccagggttaaatggtcttaaa
ggattgaagggtgaaccaggtcaaaagggtgacagagggccccttggtcttccaggagca
tctggcttagacggaaagccaggaccccggggtgtagatggcccagctggtccccatggc
cctgcaggtcctaaaggagacagaggtgaaaagggaactgtaggtgaccctggacccaga
ggaccatacggcttgcctggcaaagatggcgagcctggccttgatggtttccctggtcct
cgaggagaaaagggtgatataggagaaaagggcgaaaagggggaaaagggaaagaaaggc
aaaaaggggcctaaaggggagaaaggagaacagggtgctcctggattagatgcaccttgc
ccattgggtcccgatggattaccaatgcctggctgttggcaaaagggagtcacaccatgg
cttattgccaaaaagagataa
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