Gymnogyps californianus (California condor): 127016561
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Entry
127016561 CDS
T08687
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
gcl
Gymnogyps californianus (California condor)
Pathway
gcl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gcl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127016561
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gcl03019
]
127016561
Messenger RNA biogenesis [BR:
gcl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
127016561
U7-dependent histone pre-mRNA processing factors
127016561
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Lactamase_B_2
Motif
Other DBs
NCBI-GeneID:
127016561
NCBI-ProteinID:
XP_050753094
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Position
5:53566123..53582279
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AA seq
782 aa
AA seq
DB search
MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDENFSMDIIDSLRKHVHQVDAVLL
SHPDPLHLGALPYAVGKMGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD
AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR
EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA
GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN
NPFQFRHLSLCHSLSDLARVPSPKVVLASQPDLECGFSRDLFIQWCQDSKNSIILTYRTT
PGTLARFLIDNPSEKVIDIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQSKEADIDSS
DESDAEEDIDQPTVHKTKHDLMMKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYGEII
KPEDFLVPELQATEEEKSKLESGLTNGEEPMDQDLSDVPTKCISATESMEIKARVTYIDY
EGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAECCRAFGGKDIKVYMPKLHETVDAT
SETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVLDMRVSKVDTGVILEEGELREDEDLE
MQVDMPSSDSSVIAQQKAMKSLFGDDDKEMCEESEIIPTLEPLPPHEVLGHQSVFMNEPR
LSDFKQVLLREGIQAEFVGGVLVCNNLVAVRRTETGRIGLEGCLCQDFYRIRDLLYEQYA
IV
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atgacatcgattatcaagttgactacgctttcaggggtgcaggaggaatctgccctttgc
tatctgttgcaagtagatgaatttcgttttcttttggactgtggctgggatgaaaacttt
tctatggatattattgattctctgaggaaacatgtacaccaggttgatgctgttcttctt
tctcatcctgaccctctacaccttggtgctcttccatatgcagttggaaaaatggggttg
aattgtgccatttacgcaactattcctgtatataaaatgggacaaatgtttatgtatgat
ctctaccagtcccgccataatactgaagatttcacactctttacattggatgatgtagat
gcagcctttgataagatacagcagctgaagttttctcagattgtgaacttgaaaggcaaa
ggacatggtttgtcaatcacaccgttgccagctggccacatgataggaggcacaatttgg
aagattgtcaaggatggagaggaagaaattgtttatgcagttgatttcaaccacaagagg
gagatccatctgaatggatgttccttggaaatgttgagcaggccttcattgcttattaca
gattcatttaatgctacttatgtacaacccaggagaaagcaaagggatgaacagctactg
actaatgttttggagacattacgaggtgatggaaatgtattaatagctgtggatacagca
ggcagagttctggaacttgctcaacttcttgatcagatctggagaacgaaagatgcagga
ttaggagtctactctctagcacttttgaataacgtcagctacaatgtagtggagttctct
aaatcacaggttgaatggatgagtgacaagttgatgaggtgctttgaagacaagagaaac
aatccttttcagttccgccatctctccttatgtcatagtctatctgatctggctcgagtg
cctagtccaaaagttgttcttgccagtcaacctgacttagaatgtgggttctctagagat
cttttcattcagtggtgccaggattcaaaaaactctataattttaacttatcgcactacg
cctggaacattagcacgattcctgattgataatccttctgaaaaagttatagatattgag
ttgagaaaacgtgtcaagttggaaggaaaagaacttgaagaatacctagaaaaggagaaa
ctaaagaaagaagcagctaagaagttagaacagtctaaagaggcagatattgattccagt
gatgagagtgatgctgaagaggatattgatcagccaactgtacataagaccaaacatgat
ttgatgatgaaaggtgaaggtagccggaaaggaagcttcttcaaacaggcaaagaaatct
tatccaatgtttccagcccctgaagaaagaattaaatgggatgaatatggcgagattatc
aaacctgaggattttctagttccagaacttcaagcaacagaagaagaaaaaagcaaatta
gaatctggtttgacaaatggagaagagcctatggaccaggatttatcagatgttcctacc
aaatgtatttctgcgacagaatccatggaaattaaagccagagttacatacattgactat
gaaggacgctcagatggggactcaattaaaaaaattattaaccaaatgaaaccaagacaa
ctgatcattgtccatggaccacctgaggccagtcaggaccttgcagaatgttgcagagct
tttggtggaaaagatattaaagtttacatgccaaaactgcatgaaactgtagatgcaacc
agcgaaactcatatttaccaggtcaggttaaaagattctcttgtcagctcccttcagttc
tgtaaagccaaggatgctgagttggcttggatagatggtgttctggacatgcgggtttcg
aaagtggatactggagttattttggaagagggagagctgagggaagatgaagacttagag
atgcaagtggatatgccttcttcagactctagtgtcattgcacaacagaaggccatgaaa
agcctcttcggtgacgatgacaaggagatgtgtgaggagagtgagatcattcctactttg
gaacctctgccacctcatgaggttcttggacatcagtctgtgtttatgaatgagccaaga
ctgtctgacttcaagcaagttctcttgcgagaaggtatacaagctgaatttgtaggagga
gtgcttgtgtgcaataatctggtggctgttcgcaggactgaaacggggcgcattggattg
gaaggctgtctctgtcaggacttctataggataagagaccttttatacgagcaatacgct
attgtctaa
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