Gymnogyps californianus (California condor): 127017004
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Entry
127017004 CDS
T08687
Name
(RefSeq) transcription factor SOX-6 isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
gcl
Gymnogyps californianus (California condor)
Brite
KEGG Orthology (KO) [BR:
gcl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gcl03000
]
127017004
Transcription factors [BR:
gcl03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
127017004
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
127017004
NCBI-ProteinID:
XP_050753835
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All DBs
Position
5:complement(15004399..15382673)
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AA seq
790 aa
AA seq
DB search
MSSKQATSPFACAADGEETMTQDLASRDKEEGNSDQHATSHLPLHNVMHNKPHSEELPTL
VTTIQQDPEWDGVISAQHRMESESNKLCSLYSFRNTSTSPNKPDEGGRDRSELMTSVNFG
TPERRKGSLADVVDTLKQKKLEEMTRTEQEDSSCMEKLLSKDWKEKMEKLNTSDILGEIK
GTPESLAEKERQLSTMITQLISLREQLLAAHDEQKKLAASQIEKQRQQMDLARQQQEQIA
RQQQQLLQQQHKINLLQQQIQQVQGHMPPLMIPIFPHDQRTLAAAAAAQQGFLFPPGITY
KPGDNYPVQFIPSTMAAAAASGLSPLQLQQLYAAQLASMQVSPGAKMPSTPQPPNTTGAL
SPTGMKNEKRGTSPVTQVKDEAAQPLNLSARPKTAEPVKSPTSPTQNLFPASKSSPVTVT
NKSGIPSPLGGSLGRGSSLDILSSLNSPALFGDQDTVMKAIQEARKMREQIQREQQQQQQ
PHGVDGKLPSMNNMGLNNCRNEKERTRFENLGPQLTGKPNEDGKLGPGVIDLTRPEDAEG
SKAMNGSAAKLQQYYCWPTGGATVAEARVYRDSRGRASSEPHIKRPMNAFMVWAKDERRK
ILQAFPDMHNSNISKILGSRWKSMSNQEKQPYYEEQARLSKIHLEKYPNYKYKPRPKRTC
IVDGKKLRIGEYKQLMRSRRQEMRQFFTVGQQPQIPITTGTGVVYPGAITMATTTPSPQM
TSDCSSTSASPEPSIPVIQSTYGMKTDSGSLAGNEMINGEDEIEMYEDYEDDPKSDYSSE
NEAHEAVSAN
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atgtcttccaagcaggctacctctccatttgcatgtgcagctgatggagaggaaaccatg
acccaggacttagcatcacgagacaaggaagagggcaacagtgatcagcatgcgacctct
catctgcctctacataatgtaatgcacaacaaacctcactctgaggagctaccaactctg
gtcacaaccatccaacaagatcctgagtgggatggagtaatctcagcccaacacagaatg
gagtcagagagtaataagttatgttccctatattccttccgaaatacctctacctcacca
aacaagcccgacgaaggaggtcgtgaccgcagtgagctaatgaccagtgttaattttgga
acaccagaacgccgcaaaggaagccttgcagatgtggtggacacactgaagcagaagaaa
ctagaagaaatgaccaggactgagcaagaggattcatcctgcatggaaaagctactttct
aaagactggaaggagaagatggaaaaattaaacacaagtgatatccttggagaaattaaa
ggtacaccagaaagcctggcagaaaaagagcgacagctctctactatgatcacccagctg
atcagcttacgggagcagctcctggctgcccatgatgaacagaaaaagctggcagcctca
caaattgaaaaacaacggcagcaaatggaccttgctcgccaacagcaagaacagattgca
agacaacagcagcaacttctgcaacagcagcacaaaatcaatctactgcagcagcaaatt
cagcaggttcagggtcacatgcctccgctcatgatcccaatttttccacacgaccagcgg
acactggcagcggctgctgcagctcagcagggattcctcttccccccaggaataacttac
aagccaggtgataactaccctgtgcagttcattccatcaacaatggcagctgctgctgct
tctggactcagccctttacagctccagcaactgtatgcagctcagctggcaagcatgcag
gtttctcctggagccaaaatgccatctactccacagccaccaaatacaacaggggcactc
tcacccactgggatgaaaaatgagaagagagggaccagcccggtaactcaagttaaggat
gaagcagcccagccactgaatctttcagcccgacccaaaacagctgaacctgtcaaatcc
ccgacatctccaacacagaacctcttcccagctagtaaaagcagtccagtgacagtgacg
aacaagagtggcatccccagcccgctcggtggatctctaggaagaggatcctctttagat
atcctttccagtcttaattcacctgccctatttggggaccaggacacagtaatgaaagcc
attcaggaggctcgaaaaatgagagagcagatccaaagggagcagcagcagcaacagcag
ccgcatggtgttgatggaaaactgccctccatgaataacatgggtctaaacaactgcagg
aatgaaaaggaaagaacaaggtttgaaaatttaggcccacagttaacagggaaacccaat
gaagatggaaaactgggccctggtgtcattgatcttacaaggccagaagatgcagaagga
agtaaagcaatgaatggctctgcagctaaactacagcagtattattgttggccaacagga
ggtgccactgtggctgaagctcgagtctaccgggattcgcggggccgggccagtagcgaa
ccacacatcaaacgaccaatgaatgctttcatggtttgggcaaaggatgagcgtcgaaaa
attctccaagccttccctgacatgcacaactccaacattagcaaaatcctgggatctcgc
tggaagtccatgtcaaatcaagagaaacaaccttattatgaagagcaggcacggctaagt
aaaatccacctagaaaagtatcctaattacaaatacaaacctcgaccaaaacgtacctgc
attgttgacggaaagaaattgcgtattggtgaatacaaacaactgatgaggtctcgaaga
caggagatgaggcagttttttactgtaggacaacagcctcaaattccaatcaccacggga
acgggggttgtctatcctggtgctattaccatggcgactaccacgccatcacctcagatg
acatcagattgctccagcacctctgccagccctgagcccagcatccctgtcattcagagc
acttatggtatgaagacggacagcggaagccttgctggaaatgaaatgataaatggagag
gatgaaatagaaatgtacgaggactatgaggatgatcccaaatcagactatagtagtgaa
aacgaagcccatgaggcagtcagtgccaactga
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