Gymnogyps californianus (California condor): 127018358
Help
Entry
127018358 CDS
T08687
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(XVIII) chain
KO
K06823
collagen type XVIII alpha
Organism
gcl
Gymnogyps californianus (California condor)
Brite
KEGG Orthology (KO) [BR:
gcl00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
gcl04147
]
127018358
00535 Proteoglycans [BR:
gcl00535
]
127018358
00536 Glycosaminoglycan binding proteins [BR:
gcl00536
]
127018358
Exosome [BR:
gcl04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
127018358
Proteoglycans [BR:
gcl00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
127018358
Glycosaminoglycan binding proteins [BR:
gcl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
127018358
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
127018358
NCBI-ProteinID:
XP_050755905
LinkDB
All DBs
Position
7:complement(805231..846624)
Genome browser
AA seq
1350 aa
AA seq
DB search
MSPGCPPRRLLLGLFVLLIPAASQEPENLSAEVSLLELIGDPPPEEILKIYGPDNNPGYV
FGPNANTGQVARYHLPSPFYRDFSLLFHIQPTTPRAGVLFAITDSSQSIIYVGVKLSELR
AGKQQIIFYYTEPGSPSSYAAALFTVPTLLNQWTRFAISVEEDEVVLYLDCEEHERVHFE
RSPDEMELEDGSGLFVAQAGGADPDKYQGVIADLKLQGDPRAAERQCEEEEDDAEEVSGD
FGSGAEGGHQPSGKVGGVPGLVDAVPVTSPPVAAGSGPRSGGGSLQQAERTRAEETLRVS
TGGTGPKGEKGEKGERGLKGDSATGSIVGTGSVKGEKGEKGELGVKGSAGFGYPGSKGQK
GEPGDPGTPGTLSRHTDGSVVEQVTGPPGPPGKDGAPGRDGEPGDPGEDGKPGDMGPQGF
PGTPGEPGLKGEKGDPGVGPRGPPGPPGPPGPPGPSSKHDKLTFIDMEGSGFGGDLESLR
GPRGPPGPPGPPGVPGLPGEPGRFGMNRTDLLGPPGLPGRDGTPGPPGPAGPPGRDGAAG
QPGPKGEQGDVGDLGLPGAPGPKGSKGETGPAGAPGEMGLAGLPGPIGPRGQPGPPGPPG
PPGPGYEAGFGDMEGSGLAFASGSPGPPGPEGPQGVPGLPGVKGEVGSPGQPGLPGLKGD
AGVPGVDGRPGLEGFPGPQGPKGDRGSPGEKGERGQDGVGLPGXPGPPGPPGQVIAVSSE
DKSLAALPGPEGRPGHAGFPGPVGPKGDRGSSGPQGSPGLKGEKGEPGVIISPDGTVVTA
KVKGEKGEPGLRGPMGPSGPQGRAGMKGEIGFPGRPGRPGMNGLKGEKGDPVDVSSVLGL
RGPPGPPGPPGPPGPPGSIVYDSSNTFSDSGHPALPAFPGFHQFPGQKGEKGDPGAPGPP
GHFPYNPSHFGANLRGDKGDAGPKGEKGEPGSTPLYGPSISGLPGPPGPQGYPGLPGPKG
DSIVGPPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQAISIPGPPGPPGPPGP
PGTSGTSLGLRTLPTYQAMLSAAHELPEGGLVFLTDRQELYVRLRGGFRRVLLEEHTLIP
SSALDNEVYDKPPSVHYTGPQPPLQPRGPLHPLRNHSPPPTARPWRGDEVVANQHRLPEQ
PLLHHQHELLNSYYIHRRPDPAPVAAHVHQDFQPALHLVALNTPLSGGMRGIRGADFQCF
QQARQVGLAGTFRAFLSSRLQDLYSIVRRADRAAVPIVNLRDEVLFSNWEALFTGSGAPL
RAGARILSFDGRDVLRDAGWPQKNVWHGSDAKGRRLPESYCETWRTEERTATGQASSLGS
GKLLEQVASSCQHTFVVLCIENSFMTAAKK
NT seq
4053 nt
NT seq
+upstream
nt +downstream
nt
atgagcccagggtgccccccgcggcggctgctgctcgggctctttgtcctgctgatcccc
gccgcttcccaggagccggagaacctgagcgccgaggtcagcctcctggagctgatcgga
gaccccccgccggaggagatcctcaaaatttatggccccgacaacaaccccggctatgtc
ttcggccccaatgccaacacgggccaggtggcccggtaccacctgccgagccctttttac
cgggacttttccctcctgttccacatccagcccaccaccccccgggccggcgtgctcttt
gccatcacggactcctcgcagagcatcatctacgtgggcgtcaagctttcggagctgcgg
gcgggcaagcagcaaatcatcttctactacacggagccgggctccccaagctcgtacgcg
gcggccctcttcaccgtgcccaccttgctcaaccagtggacgcgctttgccatcagcgtg
gaggaggatgaagtcgtcctctacctggactgtgaggagcacgagcgggtccacttcgag
cgctccccggatgagatggagctggaagatggctccgggctctttgttgctcaggctgga
ggagccgacccagataaataccagggggtgattgctgatttgaagctgcaaggggacccg
cgggcggccgagcgccagtgcgaggaagaggaggacgacgctgaggaggtctctggcgat
ttcggcagcggggcagaaggtggacaccaaccctcggggaaagttgggggtgtcccgggg
ctggtggatgccgtccccgtcacctctccccccgtggcggcgggcagtgggccgaggagc
ggcgggggatccctgcagcaagctgagaggaccagagcggaggagacgctgcgggtctcc
acgggaggcaccggccccaaaggcgaaaagggggagaagggcgaacgtggcctgaaaggg
gactcggcgaccggcagcatcgtggggacgggcagtgtcaagggtgaaaagggagagaaa
ggagaactgggcgttaagggcagcgctggatttggctaccccggctccaaaggccagaaa
ggggaaccgggcgaccccggaacccccggaaccctctcacggcacaccgatggctcggtg
gtggagcaggtcaccggtcccccagggccgccggggaaggacggagcccccggcagggat
ggcgagcctggcgatcccggcgaggacggcaaacctggcgatatggggccccaggggttc
cccgggacgccgggggagcccggtctgaagggggagaagggtgacccaggtgtggggccg
aggggacccccaggaccacctggccccccaggaccaccgggaccctcctccaagcatgac
aagctgaccttcatcgacatggagggctctggcttcggtggcgacctggagagcctgcgg
ggtccgcgagggccgcccggtcccccagggccacccggtgtacccggtttgccaggggag
ccgggacggtttgggatgaaccgcacggacctgctgggaccgccggggctgccgggcagg
gacgggacccccggacctccggggccagcgggtcctcctggaagagatggggcggctggg
cagccggggcccaaaggagagcagggtgacgtgggcgacctcggcctccccggtgcaccg
ggacccaagggcagcaagggagaaacgggaccagcaggagccccgggagagatgggttta
gctggccttcccgggcccatcggaccccgagggcagccagggccccccggtcccccggga
ccgccggggccgggctacgaggctggatttggtgacatggagggctcagggctggcgttc
gcttctggctcccccggaccacccggacccgaaggaccacagggggtgccgggactgcca
ggggtgaagggggaggtcggtagccccgggcagcccggcttgccgggactgaagggagat
gctggtgtgcccggtgtggatggccggcctggcctggagggcttccccggaccccaggga
cccaaaggtgacagaggcagccccggcgagaagggcgagcgaggccaagatggtgtgggg
ctgcccggcncccccggtccgcctggtccccctggacaggtcatcgctgtctcgagcgaa
gataagtctttggcggctttgcccggtccagagggcagaccgggtcatgccggcttcccg
ggcccggtgggaccgaaaggagaccgggggtcgtctggtccccagggctccccggggttg
aagggggagaagggggagcccggcgtcatcatcagccccgatgggaccgtggtcactgcg
aaggtgaaaggagaaaagggggagccggggctgcgcggaccgatgggaccctcgggtccc
cagggacgagcagggatgaagggagagatcggctttccgggcagacccggacgtcccggc
atgaacgggctgaagggcgagaagggtgaccccgtggatgtcagtagtgtgctgggcttg
cggggtcccccgggacccccaggtcccccagggccccctgggccacctggcagcatagtc
tacgacagcagcaataccttcagcgactcgggccatcctgcgctgccagccttccccggt
ttccaccagtttccaggacaaaagggagagaaaggcgatcccggagccccgggaccccca
ggccacttcccctacaatccgagtcacttcggtgccaacctgcggggtgacaagggggat
gcaggtcccaagggtgagaagggcgagccaggcagcaccccgctctatggtcccagcatc
tctgggctgccggggcctccggggccccagggctaccccgggctgccgggtcccaagggg
gacagtatcgttgggccgccggggcctcccggacctcagggcccccctggtattggatac
gaggggcggcagggcccccctggccctcccggcccccctggtccaccctccttcccaggt
ccccacagacaagctatcagcatccctggaccccctggaccgccgggaccccccggaccg
ccaggcaccagcgggacgtccttggggctgcgtaccctgccgacctaccaggcgatgctg
agcgccgcgcacgagctgcccgagggtggcctcgtcttcctgaccgaccggcaagagctc
tacgtccgcctgcgtgggggcttccgacgggtgctgctggaggagcacaccctgatcccc
agttcggctctggacaacgaggtgtacgacaagccgcccagcgtccactacaccggcccc
cagccccccctccagccccgcggacccctccaccccctccgcaaccacagccccccgccc
accgcccgaccctggcgcggggacgaggtggtggccaaccagcaccgcctgcccgagcaa
cccttgctccaccaccagcacgagctcctcaacagctactacatccaccgccggccggat
ccggcccccgtggctgcccacgtgcaccaggacttccagcccgcccttcacctggtggcc
ctgaacaccccgctgagcggaggcatgcgcggcatccggggcgccgatttccagtgcttc
cagcaagcccggcaggtcgggctggccggcaccttccgcgccttcctctcctcccgcctg
caggacctctacagcatcgtgcgcagggccgaccgcgccgccgtgcccatcgtcaacctc
cgggacgaagtgctcttcagtaactgggaagcccttttcacgggtagcggggccccgctg
cgagccggtgcccgcatcctctccttcgacggccgggatgtcctgcgggatgcgggatgg
ccgcagaagaacgtctggcacggctcggatgccaagggccggcgcttgcccgagagctac
tgtgagacatggcggacggaggagcgcactgccaccggccaggcttcctcgctgggctcc
ggcaagctgctggagcaggtggccagcagctgccagcacaccttcgtcgtcctctgcatc
gagaacagcttcatgaccgccgccaaaaagtga
DBGET
integrated database retrieval system
