KEGG   Gymnogyps californianus (California condor): 127018984
Entry
127018984         CDS       T08687                                 
Name
(RefSeq) LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase COP1
  KO
K10143  E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27]
Organism
gcl  Gymnogyps californianus (California condor)
Pathway
gcl04115  p53 signaling pathway
gcl04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:gcl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    127018984
 09140 Cellular Processes
  09143 Cell growth and death
   04115 p53 signaling pathway
    127018984
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:gcl04121]
    127018984
Enzymes [BR:gcl01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     127018984
Ubiquitin system [BR:gcl04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    127018984
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     127018984
SSDB
Motif
Pfam: WD40 WD40_CDC20-Fz WD40_Prp19 Beta-prop_TEP1_2nd WD40_WDHD1_1st Beta-prop_EML_2 zf-C3HC4_2 Beta-prop_EIPR1 WDR55 Beta-prop_RIG_2nd EIF3I Beta-prop_WDR19_1st Beta-prop_TEP1_C zf-C3HC4 zf-RING_2 zf-RING_UBOX Beta-prop_EML Beta-prop_CAF1B_HIR1 Beta-prop_DCAF4 zf-C3HC4_3 zf-RING_5 Beta-prop_WDR90_POC16_2nd zf-C3HC4_4 WD40_RFWD3 RING_XB3-XBAT31 Beta-prop_WDR35_TULP_N Beta-prop_Vps41 WD40_like Beta-prop_IFT140_1st Beta-prop_DCAF12 Beta-prop_IFT122_1st zf-rbx1 zf-RING_10 zf_C2H2_10 zf-RING_11 Sina_RING
Other DBs
NCBI-GeneID: 127018984
NCBI-ProteinID: XP_050756790
LinkDB
Position
8:complement(4750594..4878970)
AA seq 722 aa
MSGSRPPPHPAAPPAATPASSSSSSSSSSSSAAMAPGSSSSGSAAARPVLVAAAVSGSGA
GLARLAAAARPGGGGGSSAGGGGSGAGGGGGGAAAARKRPLLTPLCNGLINSYEDKSNDF
VCPICFDMIEEAYMTKCGHSFCYKCIHQSLEDNNRCPKCNYVVDNIDHLYPNFLVNELIL
KQKQRSEEKRLKLDHSVSSTNGHRWQIIQDLLGTDQDNLDLANVNLMLELLVQKKKQLEA
ESHAAQLQILMEFLKVARRNKREQLEQIQKELSVLEEDIKRVEEMSGLYSPVSEDSTVPQ
FEAPSPSHSSIIDSTEYSQPPGFSGSSQTKKQPWYNSTLASRRKRLTAHFEDLEQCYFST
RMTRVSDDSRTTSQLDEFQECLSKFTRYNSVRPLATLSYASDLYNGSSIVSSIEFDRDCD
YFAIAGVTKKIKVYEYGTVIQDAVDIHYPENEMTCNSKISCISWSSYHKNLLASSDYEGT
VILWDGFTGQRSKVYQEHEKRCWSVDFNLMDPKLLASGSDDAKVKLWSTNLDNSVASIEA
KANVCCVKFSPSSRYHLAFGCADHCVHYYDLRNTKQPIMVFKGHRKAVSYAKFVSGEEIV
SASTDSQLKLWNVGKPHCLRSFKGHINEKNFVGLASNGDYIACGSENNSLYLYYKGLSKT
LLTFKFDTVKSVLDKDRKEDDTNEFVSAVCWRALPDGESNVLIAANSQGTIKTMLSEAAA
PS
NT seq 2169 nt   +upstreamnt  +downstreamnt
atgtcgggcagccgcccgccgccgcaccccgccgcgccgcccgccgccaccccggcctcc
tcctcttcctcctcttcctcctcctcctcttcggcggccatggcgccgggctcgtcctcc
tcgggcagcgcggcggcgcggcctgtgctggtggcggccgccgtgtcgggctccggcgcg
gggctggcccggctggcggcggcggcgcggcccggcggcggcggcggctcctccgcggga
ggcggcggtagcggcgcgggaggcggcggcggcggcgcagcagcagcaaggaagaggccg
ctgctcaccccgctctgcaacgggctcatcaactcctacgaggacaagagcaacgacttc
gtctgccccatctgttttgatatgattgaggaagcctacatgacgaaatgtggacacagc
ttctgctataaatgtattcaccagagcttggaggacaataacagatgtcccaaatgcaac
tatgttgtggacaacatagatcatctttatcccaacttcttagtcaatgaacttattctt
aaacagaagcaaagatctgaggagaaaagactcaaactggaccattcagtgagtagcacc
aatggccataggtggcagataattcaagatttgttgggtactgatcaagataatcttgac
ttggccaatgtcaacctgatgctggagttgctggtgcaaaagaagaagcagttggaagca
gagtcccatgctgcccaattgcagatccttatggaatttctgaaagttgccaggagaaac
aaacgagagcaattggagcagatccagaaggagctaagtgttctggaagaagatattaaa
cgagtagaggaaatgagtggcttgtactccccagtcagtgaggacagtacggtgccgcag
tttgaggctccctcaccttcacacagtagtattattgactccacggagtatagccagcct
ccaggcttcagtggcagttctcagaccaaaaagcagccgtggtataacagcacgctagcc
tcacgacgcaagcggctcacagctcattttgaggacctagagcagtgctatttttccacc
aggatgacacgtgtctcggatgacagcagaaccacaagccagctggatgagtttcaggag
tgtctatccaagtttacgcgctacaattctgtccgacccctggcaacgctgtcttacgct
agtgacctctacaatggctccagcatagtatccagtattgagttcgaccgagactgtgac
tactttgccatcgctggggtgacaaagaagattaaagtctatgagtatggtacagtcatt
caggacgcggtggatattcactaccctgagaatgaaatgacctgtaattccaaaatcagc
tgtatcagctggagtagttaccacaagaacctgctagccagcagcgactatgaaggcacc
gtcatcctttgggatggattcacgggacaaagatccaaggtctaccaggagcatgagaaa
aggtgctggagtgttgacttcaacttgatggacccaaagctattggcttcaggctctgat
gatgccaaagtgaagctgtggtctaccaacttggacaactcggtagcaagcatcgaggcc
aaggctaacgtgtgttgtgtcaaattcagcccctcttctaggtatcacctagcttttggc
tgtgcagatcactgtgttcactactacgatcttcgcaacactaagcagccaatcatggtg
ttcaaagggcatcgcaaggcagtttcctacgcaaaatttgtgagcggggaagaaatcgtc
tctgcgtcaacagacagtcagctgaagctgtggaacgtagggaagcctcactgcttgcgg
tccttcaagggtcacatcaacgagaagaatttcgtagggcttgcgtccaatggagattac
atcgcctgtggaagcgaaaataattccctttacctatactataaaggcctctcaaagaca
ctgctgaccttcaagtttgatacagtcaaaagtgtcctggacaaggaccggaaagaagat
gacacaaatgagtttgtgagtgctgtatgctggagggcactaccagatggggagtccaac
gtgctgattgctgctaacagtcagggtacaattaagaccatgctttcagaggctgctgca
ccatcttag

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