Gymnogyps californianus (California condor): 127019748
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Entry
127019748 CDS
T08687
Name
(RefSeq) protocadherin-11 X-linked isoform X1
KO
K16498
protocadherin delta 1
Organism
gcl
Gymnogyps californianus (California condor)
Pathway
gcl03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
gcl00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
127019748
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
gcl01009
]
127019748
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
gcl04515
]
127019748
Protein phosphatases and associated proteins [BR:
gcl01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
127019748
Cell adhesion molecules [BR:
gcl04515
]
Cadherins
Protocadherins
127019748
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
Fibulin_C
K319L-like_PKD
TMEM154
Cadherin_4
Motif
Other DBs
NCBI-GeneID:
127019748
NCBI-ProteinID:
XP_050757907
LinkDB
All DBs
Position
9:5392715..5868403
Genome browser
AA seq
1245 aa
AA seq
DB search
MDLLSGTYLLAVLLACIVFQSGAQEKNYTVREELPENVLIGNLLKDLNLTLDPDVPLSSP
LQFKLVYKTGDVPLVRVEENTGEIFTTANRIDREKLCSGILSENRCFYEVEVAVLPDEVF
RLVKIRFLIEDINDNAPLFPSTVINISIPENTAINSRYSVPSAIDPDIGVNGIQHYELLK
PKTAPKRTFGSITNDQGQNVFGLDIIETPEGDKWPQLIVQQILDREQKDTYVMKIKVEDG
GSPPRSSTAILQVTVTDVNDNRPVFKENDIEVSVPENAPVGTSVSQLHATDADLGSNAQI
HFYFSNQISSLAKRLFAIDNTTGLITIREPLDREESPVHKLTVLASDGSSTPSRATVTVN
VTDINDNVPSIDTRYIINPVNGTVLLSEKAPLNTKIALITVTDKDADLNGKVTCFTDHDV
PFRLKPVFDNQFLLETAMFLDYEATREYAIKIVASDSGKPPLNQSAMLLIKIKDENDNAP
VFTQPIIGLSIPENNAPGTQLTKISATDADSGRNAEISYILGSDAPSIFNLDRRTGILTA
VRKLDREKQDRYSFAVLAKDNGMPPLQTNATVTVSVLDQNDNSPAFTHNEYNFYVPENLP
MYGTVGLITVTDADSGENAAVTLSILNGRDNFIIDPLTGVIRPNITFDREQQGSYTFQVK
AVDGGRLQRSSTAKVTINVVDVNDNRPVFVIPSSNYSYELVPTSASPGSVVTKVFAVDND
TGMNAELRYSIIGGNSRGLFTIDQLTGNITLKEKVITSDHGLHRLVIKVNDLGQPESLYT
IALVHLFVNETVTNSSYIQELVRRNMETPVGQNVGDGEITPQTNDYVKIIIAIIAGTMTV
ILVIFVTALVRCRQTPRHKVVQKNKQSGEWVSPNQENRQIKKKKKKKKRSPKSLLLNFVT
IEESKPDDPGHEHINGTLDIPVELEEQTMGKYNWATTPTTFKPDSPDLAKHYKSASPQPT
FQIKPETPVPPKKHHVIQELPLDNTFVVGCDSLSKCSSSSSDPYSVSECSCQGGFKTPGP
IHTRQHAKEMGRPQTPLKETTLEPWTQPQPQRRVTFHLPDGSQESCSDSGLGDHEPTSGA
STSHPLPLGFPQEEYYEQASPNSRTEGDGNSDPESTIEVNLQKALAEASETCTQECLILG
HSDNCWMPPSLTQYQQSNTPLPSFGFQQGWGRGARPEGRHTLGRPLPKDNTDKGQGGPRP
QFYNTCERHCASEDPVKVIPLANFAASHQAPVSGSSTTFIHEHQL
NT seq
3738 nt
NT seq
+upstream
nt +downstream
nt
atggacttgctgtctggaacctacctcttggcagtcttattagcctgtattgtatttcaa
tctggcgcacaggagaagaattataccgtgcgggaagaactgcctgaaaatgtcctcatt
ggcaatttgctcaaggatcttaacctaacgctggacccagatgtgcccctttcctcaccg
ctacagttcaagcttgtgtataagactggggatgtaccattagtacgggtggaggagaac
actggtgagatattcacaactgcaaaccgcatagaccgagagaagctgtgctctggcatc
cttagtgagaatcgctgcttttatgaggtggaggttgctgttttgcctgatgaagttttc
agactggtcaagatcagattcctaatagaggatataaatgacaatgcccccctcttcccc
tcaacagttattaacatctctatccctgaaaacacagcaattaattctcgctattctgtc
ccatctgccattgatccagacattggtgtgaatggtattcaacattatgaactacttaag
cccaaaacagctccgaaaaggacatttggatccattacaaacgatcagggtcaaaatgta
tttggtcttgatataattgagacacctgagggagataagtggccccaactgattgtccaa
cagatcctggatagggagcagaaggatacctatgtgatgaaaattaaagttgaagatggt
ggaagccctccaagatctagcactgccatcctgcaagtcacagtgactgatgtgaatgat
aatcgcccagtcttcaaagagaatgacattgaagttagcgttccagaaaatgctccagtg
ggcacctctgtttctcagctccatgccactgatgcagacctgggctcaaatgcacaaatc
cacttctatttcagcaatcagatctccagtttggccaagaggctgtttgccattgataac
accactggcctcatcactataagagaaccactagacagggaggaatctcctgtacacaaa
ttaacggttttggcaagtgatggtagttcaactccatcaagagcaacggtgactgttaat
gtcacagatattaatgacaatgtcccatcaatagacacgagatacatcatcaatccagtg
aacgggacagtgcttttgtctgagaaggctccccttaatacaaaaattgcattgataaca
gtaacagacaaggatgctgatctgaacggaaaagttacttgttttacagatcatgatgtc
ccttttaggctaaagccagtgtttgataatcagtttcttctggagacagccatgtttcta
gattatgaagccacacgggaatatgccattaaaatagtggcttcagattcagggaaacct
cccttaaaccaatctgcaatgctcctgattaaaattaaagatgaaaatgacaatgccccc
gtttttacacagcctatcataggtctttccatccctgaaaacaatgctcctggtactcag
ctaaccaagataagtgctacggatgctgacagtgggcgcaatgctgagatcagctatatc
ctgggttctgatgcaccctctattttcaaccttgaccgccgtacaggcattctgacagca
gtgagaaagctggacagagaaaagcaagacaggtactccttcgctgtgctagctaaggat
aatgggatgccacccttgcagactaatgctactgtgacagtgtcagtcctggaccagaat
gataacagccctgctttcacacataatgaatataatttctatgtgccagaaaacttaccc
atgtatggcacagtggggcttatcacagttacagatgctgactcgggagagaatgctgcg
gtcactctctctatattaaacggtagagataatttcattatagatccacttactggtgta
ataagaccaaatattacttttgatagggaacagcaggggtcatatactttccaggtgaag
gctgtggatggaggaagactgcagcgttcctcaactgccaaagtgaccatcaatgttgtt
gatgtaaatgacaacaggcccgtttttgttattccttcatctaattattcgtatgagttg
gttccaacatcagccagtccagggtctgtagttactaaagtctttgcagttgataatgac
acaggaatgaatgcagagctccgctatagcatcataggtgggaactcaaggggcttgttt
acaattgaccagttaacaggcaatattactttgaaagagaaggtaattacatcagatcat
ggcttgcacagactggtgataaaagtcaatgacctaggacagccggagtctctttatact
atagctcttgtgcatttgtttgtgaatgagacagtcaccaacagttcctacatacaagag
ctagtgcgcaggaatatggaaactccagttggccagaatgttggggatggtgagataacc
ccacaaaccaatgattatgtcaagatcatcattgccattattgcaggcactatgacagtt
attctggtaatttttgttactgctttagtacggtgccgccagacacctaggcacaaggtt
gtccaaaaaaacaagcagagtggtgaatgggtttccccaaaccaagagaacaggcagatc
aagaagaagaagaagaagaagaagcgctctccaaaaagtctcctcctcaactttgtgact
attgaagaatctaagcctgatgatcctggccatgagcacataaatggcactttagacatt
cctgtagagctagaagaacagactatgggaaaatataactgggccaccacaccaaccaca
tttaagcctgatagcccagatttagcaaagcactacaagtcagcttctccacagcctacc
tttcaaattaaacctgagactcctgtaccccccaagaagcaccatgtcattcaggaactg
cctctagataacacctttgtggtgggctgtgactcactctccaagtgctcatcaagcagc
tcggacccttacagtgtttctgaatgcagctgtcaaggaggcttcaagaccccaggcccc
atacacaccagacagcacgcaaaagaaatgggaaggccacaaactcctttgaaagaaaca
accttggagccttggactcagccacagcctcagcgccgtgtcacgtttcacctaccagat
ggctcccaggaaagctgcagtgacagtgggcttggagaccatgaacccacgagcggtgct
agcacatcgcaccctctgcccctcggcttcccccaggaggagtactatgagcaagcttca
cccaacagccggacagaaggagacggcaactcagacccggagtccactatcgaagtaaat
ctccagaaagccctggctgaagcctctgaaacctgcacgcaggagtgtctcatcctgggc
cattctgacaactgctggatgccaccttctttgacacagtatcagcagtccaacacccct
ttgccgtcgtttggcttccagcaaggctggggccgaggagccaggcctgagggacgacac
actcttgggaggccccttccaaaggacaacactgacaaaggccagggtgggcccaggccc
cagttctacaacacctgcgaaagacattgcgccagcgaagatcctgtcaaagtcattcct
ctggcaaacttcgccgcgtcccaccaggcaccggtgtctgggagtagcactacgtttata
catgagcaccagctataa
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