Gymnogyps californianus (California condor): 127019835
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Entry
127019835 CDS
T08687
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-5(IV) chain
KO
K06237
collagen type IV alpha
Organism
gcl
Gymnogyps californianus (California condor)
Pathway
gcl04510
Focal adhesion
gcl04512
ECM-receptor interaction
gcl04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gcl00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
127019835
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
127019835
09142 Cell motility
04820 Cytoskeleton in muscle cells
127019835
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
gcl04147
]
127019835
00536 Glycosaminoglycan binding proteins [BR:
gcl00536
]
127019835
Exosome [BR:
gcl04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
127019835
Glycosaminoglycan binding proteins [BR:
gcl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
127019835
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
127019835
NCBI-ProteinID:
XP_050758032
LinkDB
All DBs
Position
9:20408153..20495098
Genome browser
AA seq
1688 aa
AA seq
DB search
MEPRWRSRSLAAGCLVLLLGCWGPEEAVAAACHGCTSLSKCDCSGVKGEKGERGFPGLEG
QPGLPGFPGPEGPPGPRGSKGDDGLPGPIGPKGIRGPPGLPGFPGTPGLPGLPGQDGPPG
PQGIPGCNGTKGERGFPGSPGFPGLQGPPGPPGLPGMKGEAGEIITSLLPGQKGDPGFPG
LPGIPGPPGSVGIPGPVGPPGPPGLTGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGP
PGPPGQIGEQKRPNDIEFQKGDQGIPGDPGPPGLPGPQGPPGLPGGVKGEKGEQGEPGKR
GKPGKDGEPGQPGRDGLPGGPGINGVPGREGEKGEKGDIGPPGPPGIVISRPGIDATVGP
KGSKGLPGLPGAKGERGFSGRPGPPGLPGSPGITTVGPPGPPGLPGERGQKGDPGLPGVS
IPGQPGLDGPRGPPGPPGPPGPPAPSVPPGEGLCEQGPPGPPGIPGQQGFTGERGQKGDQ
GDTCFNCIGTGVTGPPGERGPPGPPGSPGSPGFPGPKGEKGLPGLTGLVGPPGFPGSPGA
PGRPGPKGDPGDVLTSPRMKGDKGDPGFPGPPGLPGIDGTPGRDGLPGLPGPKGEPGSVA
FKGEMGIPGDPGIPGLPGDKGLPGPPGFGPQGSPGEKGIQGVSGRPGPPGVPGPKGDPGQ
TITEPGVPGPPGPPGRNGDPGLPGDPGQPGQRGLSGIPGXKGEPGIPGIGLPGPPGPKGF
PGTPGPPGAPGTPGRPGLDGPPGPPGFPGQKGDRGFGVPGPPGPPGPPGTKGVQGPKGDP
GFPGNPGLPGRAGFDGTPGPKGDPGPSGPPGLPGPPGIPGIGGQGPPGSPGPPGPVGPPG
LQGIPGEKGDPGPPGFDVPGPPGDRGSPGYPGPPGLPGPQGSPGPPGRDGIPGFPGAKGE
MGVMGAPGPPGPPGIPGRNGLPGLKGNNGLPGPPGPPGPVGQKGIKGEAGLPGPPGKVDP
KQLGAKGEKGEPGVPGIPGLSGQKGYQGLPGDPGPPGLSGPPGVPGLPGIKGDTGLPGQP
GPTGPPGIKGAMGEMGLPGPPGIKGSQGIAGRPGQPGPAGFPGLKGEKGDPGLSGIGIPG
LPGPKGDLGLPGYPGSPGSKGIAGNPGLPGFPGSPGAKGEPGLPGFPGTPGIPGPKGIEG
PPGNPGLPGPPGPVGDIGRPGPPGPPGEKGQPGRDGIPGPAGQKGEPGLPGFGRPGPPGL
PGLSGQKGELGLPGPPGPPGLPGLKGEPGFQGFPGLQGPPGPPGLPGPPLEGPKGSPGPP
GVPGRPGPPGPEGPRGPPGSGGLKGEKGNPGQPGPPGLTGQKGDQGPPGRQGDPGRPGLN
GMKGDPGVPGVPGFPGMKGPTGPAGPAGLTGSQGLPGPPGPPGLPGTIGRSIVVKGDPGP
PGPPGQPGSKGPPGLPGPQGLPGPIGLPGDPGXDGLPGFDGPAGRKGERGLPGQPGSRGI
QGPPGPDGLQGPPGPPGAASVAHGFLITRHSQTRDTPLCPQGTSRIYDGFSLLYVQGNER
AHGQDLGTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPEPMPMSMEPLTGQSI
QPFISRCVVCEAPAMVIAVHSQTIQIPSCPPGWDSLWIGYSFMMHTSAGAEGSGQALASP
GSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATVEVSEMFSKPQSETLKAGDLRTRISR
CQVCMKKT
NT seq
5067 nt
NT seq
+upstream
nt +downstream
nt
atggagccgcggtggcggagccgtagcctagctgccggttgcctggtgctgctgctgggg
tgctgggggccggaggaggcggtggcggcggcttgccatggatgtacatctttatccaaa
tgtgattgcagtggagtaaaaggtgaaaagggtgaaaggggattcccaggcttggaagga
cagccaggtttgcctggatttccaggaccggaaggaccacctggtccaagaggttcaaag
ggtgacgatggacttccagggcctattggacccaaaggaatcagaggaccgccagggctg
ccaggatttccaggaacaccaggacttcctggattaccaggacaagatgggccaccagga
cctcagggtatcccaggatgcaatggaacaaagggagagcgtggatttccaggcagtcca
ggttttcctggtttacaagggcctcctggaccccctggtctgccaggtatgaagggtgaa
gcaggtgaaataattacatccttgctgccaggacagaagggcgacccaggatttccaggt
cttccagggatacctggaccacctggctccgtgggaataccaggtccagttggccctcca
ggacccccaggtttgacaggacctcctggtccaccaggactgccaggacctaagggtaat
atgggtttgaatttccaaggacccaaaggtgaaaaaggtgaacaaggtcttcagggacct
ccagggccaccaggacaaattggagaacagaagagaccaaatgacattgagtttcagaaa
ggagatcagggtattccaggtgatccaggcccaccaggacttcctgggccacaaggccct
cctggtcttcccggtggcgtaaaaggtgaaaaaggtgagcaaggagaaccaggcaaaaga
ggaaagcctggcaaagatggagaacctggtcagcctggtagggatggtttacctggtggg
cctggaataaatggtgtaccaggaagagagggtgaaaagggtgaaaaaggtgacattggt
ccccctggtcctcctggaattgtcatttcaagaccaggcattgatgcaacagtgggacca
aaaggtagcaaaggattgccaggacttccaggagccaaaggggagcgtggattctctggt
aggccgggcccacctggcttgccaggttctccagggatcactactgttggacctcctggc
ccacctggcttacctggtgagagaggacagaagggagatccaggtttacctggggtttct
attcctgggcaaccaggacttgatggaccacgaggacctccaggaccaccaggtccccca
gggccacctgcaccatctgttcctcctggtgaagggttatgtgagcaggggccaccaggt
cctccaggaattccaggacaacaaggctttacaggggagcgaggccaaaaaggtgatcaa
ggagacacatgcttcaattgcataggaactggagtaactgggcctcctggggagagaggg
ccaccaggacctccaggtagtccaggttctcctggttttcctggaccaaaaggtgaaaag
gggcttcctggattaactggccttgtagggccaccaggattcccagggtccccaggtgct
cctgggagacctggtcctaaaggagacccaggggatgtcctgacttctcccagaatgaaa
ggtgacaaaggagaccccggcttcccaggacctccaggtcttcctggcatagatggcact
cctggacgagatggactgccaggtctacctggccctaagggggaacctggcagtgtcgca
ttcaaaggagaaatgggtattccaggtgatccaggaataccaggtcttcctggagacaaa
ggacttcctggacctcctggttttggtccacaaggttcacctggtgaaaagggcatccaa
ggtgtatcaggccgtccagggcctcctggagttcctggtccaaaaggtgaccctggccag
actattacagaaccaggagttcctggcccccctggtcctccaggaagaaatggtgaccca
ggtcttccaggagatcctggtcagccaggtcagcgtggcttatcaggcatcccaggtngc
aaaggggagccaggtattcctggcattggacttccaggtccaccaggcccaaaaggtttc
ccagggactccaggcccccctggagctccaggaactccaggtcgccctggtctagatgga
cctcctggaccacctggtttcccaggacagaagggggatcgtggatttggagttccagga
ccacctggacccccaggaccaccaggcacaaaaggagttcaaggacctaaaggtgatcct
ggcttcccaggaaaccctggtctcccaggacgggcaggttttgatggaactccaggaccc
aaaggtgaccctggaccaagtggaccaccaggactcccaggcccaccaggcatccctggc
attggtggtcaaggtccacctggatctccaggacctccaggtcctgttggccccccagga
ttgcagggcattccaggggagaaaggggatccaggtcctccaggcttcgatgttcctggt
cctccaggtgaccgaggaagcccaggatatccaggaccccctggtctcccagggcctcag
ggttcacctggaccacctggccgggatggaatacctggatttccaggtgccaagggtgag
atgggcgtcatgggagctcctggtcctccagggcctccaggaattcctggaagaaatggc
ctgcccggcttgaaaggtaataatggattacctggtccgccagggcctcctggaccggta
ggacagaaaggcatcaaaggtgaagcaggcctgccgggtccacctggaaaagttgatccg
aaacagctaggagcaaaaggagaaaaaggcgagccgggtgttccaggtattcctggttta
tcaggacagaaaggttatcaaggtctcccaggtgacccaggcccaccgggacttagtggc
ccaccaggtgtgccaggattgccaggcatcaagggagacacagggcttcctgggcagcca
ggaccaacaggacctccagggataaaaggtgccatgggagagatgggccttccaggtccc
ccagggattaaaggcagccaaggaatagcaggacgtccagggcagcctgggcctgcagga
tttcctggattgaaaggggagaaaggtgaccctggtctttcaggcatcggtattcctggt
ctccctggaccgaagggtgatcttggtttgcctggatacccaggtagtccaggcagtaaa
ggtatagctggaaatcctggtttgcctggatttccaggcagtccaggtgcaaaaggagaa
ccaggccttcctggattcccaggaacgccaggaattccaggaccaaaaggtatcgagggg
cctccaggtaatcctggcctgcctggaccacctgggccagtaggtgatattggtcgtcct
ggccctcctggtcctccaggggagaagggacagcctggtcgagatggtatccctggacca
gctggtcagaagggcgaaccaggtctaccaggttttgggcgcccaggacctccaggactc
ccaggattgtcagggcaaaaaggagaactggggttacctggcccaccagggccccctgga
cttccaggtctgaagggagaaccaggtttccagggattccctggtctacagggtccacca
ggtccaccaggattaccagggccacctctggaaggtcctaaaggtagccctggaccacca
ggtgttccaggaaggccaggtccaccaggcccagaaggtccacgagggccaccaggcagt
ggaggacttaaaggagaaaaagggaacccgggtcagcctggcccacctggcctgactggt
caaaagggagatcaaggaccacctggacgccagggggatcctggtcgtccaggtctcaat
ggaatgaagggcgaccccggggttccaggcgttccaggattcccaggtatgaagggtccc
actggacctgcaggacccgctggcctcacaggcagtcaaggactgccaggcccaccaggt
ccaccaggtttaccgggtaccattggacgaagcattgttgtcaaaggtgaccctggtccc
ccaggtcctcccggacagcctgggtcgaaagggccacctggattgccagggccacaggga
ttgccaggtccaattggtcttcctggtgacccgggcngagatggactacctggttttgat
ggtccagcaggacgtaaaggagagagaggtcttccaggccaaccaggttcacgaggaata
cagggacctcctggtcctgatggcttacaaggcccacccggtcctcctggagcagcttct
gttgctcacggattccttataactcggcacagccagacgagggatacaccactatgtcca
caaggaacatcaagaatatatgatggattctctcttctatatgtgcaaggaaatgagaga
gcacatggccaggatttgggtactgctgggagctgtcttagacgtttcagcaccatgccc
ttcatgttctgcaacatcaacaatgtttgtaattttgcatcaaggaatgactattcctac
tggctatcaactccagagccaatgccgatgagcatggagccactgactgggcaaagcatc
cagccattcattagccgatgtgttgtgtgtgaagctcctgctatggtgatagctgtccac
agtcagaccattcagatcccttcgtgtcctccaggctgggactccctttggattggttac
tcttttatgatgcacacgagtgctggagcggagggctctggacaggccttggcatcgcct
ggatcctgtttagaagaattccgctcagctccgtttattgaatgccatggtcgtggcact
tgtaattactatgccaattcatacagtttctggctggcaactgtagaggtgtcagaaatg
ttcagtaaacctcagtcagagacactgaaagctggagacttgaggacgcgtattagtcgt
tgtcaagtttgcatgaagaagacgtaa
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