Gymnogyps californianus (California condor): 127020177
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Entry
127020177 CDS
T08687
Name
(RefSeq) collagen alpha-3(IV) chain
KO
K06237
collagen type IV alpha
Organism
gcl
Gymnogyps californianus (California condor)
Pathway
gcl04382
Cornified envelope formation
gcl04510
Focal adhesion
gcl04512
ECM-receptor interaction
gcl04518
Integrin signaling
gcl04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gcl00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
127020177
04518 Integrin signaling
127020177
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
127020177
09142 Cell motility
04820 Cytoskeleton in muscle cells
127020177
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
127020177
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
gcl04147
]
127020177
00536 Glycosaminoglycan binding proteins [BR:
gcl00536
]
127020177
Exosome [BR:
gcl04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
127020177
Glycosaminoglycan binding proteins [BR:
gcl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
127020177
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
127020177
NCBI-ProteinID:
XP_050758603
LinkDB
All DBs
Position
10:10936376..11002768
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AA seq
1671 aa
AA seq
DB search
MAGRGCPSRLAPLLLLALLWPGRAAAAESCVCKGKSPCFCDSMKGNKGEKGFPGVPGPPG
HRGFPGPEGPPGPQGPKGSPGLTGLVGPKGIRGVPGIPGFSGPPGLPGEPGTVGPPGRSG
VPGCNGTKGDRGFPGPPGRRGAPGVPGIAGIKGEKGCPADGYNQGYGAKGDPGLPGMPGL
QGTQGAQGYPGELGPQGPPGATGMPGKAGAPGPKGLMGLKVIGTKGRKGDTGLTGPPGPP
GTVIVTLSGPDNMTDLKGEKGEKGSRGLPGPMGFTGPVGDSQSEKGDRGEPGAQGKPGKE
GAPGPPGLPGQKGEQGKPGLAGRQGAKGMKGNTGPPGACGRTEYYDNVVGEKGDEGPPGP
PGRKGQRGMPGPPGPPGDAGRPGVSRPGLRGPPGFPGPKGTKGEKGQTGLCIVGPPGLPG
TTGRPGSVGLPGPPGEPGRVTFRTGLPGLPGEPGCTGPPGPPGDTGMKGDEACMCTDCSY
IPGIPGLPGSPGPHGQDGMPGREGATGPKGSLGSPGAPGFPGAQGPPGFRGDQGHKGSKG
EPGYVYPEGPKGERGDPGARGDKGRKGSSGFLGRPGPKGSKGSKGEEGLTGSKGDRGLTG
LPGSLGLPGEMGLPGLPGYGPQGIRGFKGSKGIPGPPGLPGEAGPKGETSRITPLPPLPG
PQGPDGLPGPPGVPGRVGARGQPGDSGHPGPTGDTGFPGLGFPGNPGPKGDKGLAGGRGS
PGCEGKIGDPGRPGNLGQPGEKGDPGMVIPGEPGRLGSPGGRGIPGSKGDTGFPGLPGLP
GHAGRDGDDGLRGDRGSPGVPGDPGFPGKPAECLIGLPGLPGGQGATGPPGGRGSQGSKG
KLGPPGLSIPGIYGKPGEPGLIGVQGNAGLPGPKGQSGRPGISGVPGLRGEPGIMGLLGI
PGPPGMIGRPGNPGIRGSPGFPGLKGRKGFLGAKGEPGDKGFRGPSETLVGIGNKGERGL
KGVQGRMGLRGEKGDAGVQGPPGLDGSEGIPGLPGVKGFMGLPGIPGGQGFPGAPGNKGD
MGIPGPKGQKGSPGFPGPSGDPGPPGYGGFPGDRGDPGYPSAGPPGEPGPKGDPGPPGVL
GSKGEKGSQGHPGRKGVPGPHGIRGETGSPGIPGKPGRPGDTGVKGRQGQPGQQGITGPP
GAVGDPGKNGLVGERGNQGQDGMPGPPGVKGEPGAPGRGIPGLRGIPGRRGIKGDMGLPG
FPGPPGMKGHRGDQGPVGPPGLVGLPGFQGATGMAITGQKGNRGIAGADGRPGAPGFPGP
PGLPTPSMKGSKGVRGADGIPGPTGPAGDIGPPGPKGIEGRSGYPGARGDPGFLGFPGVK
GEKGNQGPPGPPGAEGPRGPKGQHGPPGVPGRIFSVPGSKGPPGLPGIPGTPGDQGIQGI
PGLQGPKGVKGLPGSFGHPGQPGLPGPKGDRGFPGQRGQPGLIGFPGLQGLPGSPGTITA
GPTRRGFIFTRHSQSTKIPSCPRGTSQIYVGYSLLFVQGNERAHGQDLGTAGSCLQRFTT
MPFLFCNTNDVCSFASRNDYSYWLSTAAVMPVDMAPISGRALEPHISRCVVCEGAAMVIA
VHSQTTVVPACPEGWISLWKGFSFVMYTSAGSEASGQALASPGSCLEEFRAIPFIECHGR
GTCNYYTNSYSFWLASLNPRRMFRKPLPQTLKAGELENIISRCQVCMKRPV
NT seq
5016 nt
NT seq
+upstream
nt +downstream
nt
atggccggcaggggctgccccagccgcctggcgccgctgctgctgctcgccctgctctgg
ccgggccgcgccgcggcggctgagagctgtgtatgcaaaggtaaaagtccctgcttttgt
gatagcatgaaaggtaataagggtgaaaaaggctttcctggtgttccaggtccacctggt
catagaggctttcctggtccagaagggcctccagggccacagggaccaaagggttctcca
gggcttacaggcttagttggacccaaaggtatacgaggagtcccaggaatacctggattt
tcaggtcccccaggccttccaggtgaaccaggaactgttggccctcctgggcgctcgggt
gttccaggatgcaacggcacaaagggcgatcgaggttttccaggtcctccaggtagaaga
ggtgctccaggtgttccaggtattgctggcatcaaaggagagaaggggtgccctgcagat
ggatataaccaagggtatggtgcaaaaggtgatcctggattgccaggaatgcctggactt
cagggtacccagggtgctcaaggatatcctggggaacttggaccacagggccctccagga
gctacaggcatgccggggaaagcaggagctcctggacctaagggtcttatgggactgaaa
gtaataggaaccaaaggaagaaagggtgacactgggttaactggaccccctggaccacca
ggaactgttattgtgacattaagtggaccagacaacatgacggacttgaaaggagagaaa
ggagaaaaaggatcaagaggacttccggggccaatggggtttacaggcccggttggtgat
tctcaaagtgaaaagggtgaccgaggagaacctggagcacagggtaaacctggaaaagaa
ggtgccccaggtccacctggcttaccgggacaaaagggtgaacagggcaaaccaggactg
gctggcaggcaaggagctaaggggatgaaaggaaacactggtccacctggagcttgtggt
cgaacggagtattatgataatgtggttggtgaaaaaggagatgaaggaccccccggacct
ccaggacgaaaaggtcaacgtggcatgcctgggccaccaggtcctcccggagatgctggt
agaccaggtgtgtcaagacctggtctgagagggcccccaggatttccagggccaaaagga
acaaaaggagagaaaggacaaactggcttgtgtattgtaggccctccaggactacctggt
actactggcagacctggttctgttggattaccaggtcctccaggagaaccaggtagagta
acatttagaacaggcctaccaggacttcctggagagccagggtgtacaggacctccggga
cctccaggagatactggcatgaaaggtgatgaagcttgcatgtgtactgattgcagctat
ataccgggaatacctggtcttcctggttctcctgggccacatggccaggatggcatgccc
ggtagagaaggagcaacaggtccaaaaggttctctgggttctccaggagcaccggggttt
ccaggagctcaaggacctccaggttttagaggagatcaaggacataaaggatcaaaaggt
gagccaggatatgtgtatccagaagggccaaaaggtgagcgaggagatccaggagccagg
ggagacaaaggaagaaaaggttcaagtggatttctgggaagacctggccctaaaggatcc
aagggttctaaaggtgaagagggattgactggttcgaaaggagatagaggactaactgga
ttgcctggcagtcttgggcttcctggagagatggggcttcctggactgccaggatatgga
ccacaaggaataagaggtttcaaaggctctaaaggaatacctggtccacctggattacct
ggagaagctggtccgaaaggagagaccagtaggataactccgttacctccgttgccagga
cctcaaggaccagatggtttacctggacccccaggagtgcctggtagggttggagcaaga
ggtcagccaggtgattcaggacatccagggccaacaggtgacacaggctttccagggctt
gggtttcctggaaacccaggtccaaaaggagataaaggacttgcaggaggcagagggtca
ccaggttgtgaaggaaagattggagatccaggccgacctggaaacctaggacaaccagga
gaaaagggtgacccaggcatggttattcctggagagccaggtagactgggttcaccagga
ggtcgtggcattcctggctcaaaaggtgatactggatttccaggacttccaggcctacca
gggcatgctggacgtgatggtgatgatggcctaagaggagatcgtggctcacctggagtt
cctggagatccaggttttccagggaaaccagctgaatgtcttattggcctgccaggtttg
ccaggtggccagggagctacaggcccaccaggaggaagaggttcgcaaggttcaaaagga
aaactaggtcctcctggcttgagtatcccgggaatctatggaaagcctggggaacctgga
ttaataggtgttcagggaaatgcaggattacctggtcccaagggacagtctggaaggcca
ggaatctctggtgtgccaggcttaaggggagagccaggtataatgggcctgttaggaatt
cctggaccccctggcatgattggaagaccaggcaacccgggtatcagaggttctcctggc
ttcccaggactaaagggaagaaaaggatttcttggagcaaaaggcgaaccaggtgataaa
ggttttcggggaccatctgagaccttggttggtattgggaataaaggagaacgaggctta
aaaggagttcaaggaagaatgggtctaagaggagaaaaaggagatgccggtgtgcaaggt
cctccaggtcttgatgggtctgaaggaatacctggtctgccaggtgtcaaaggatttatg
ggtcttccagggattcctggaggacaaggattcccaggtgcaccaggaaacaaaggggac
atgggaattccaggtccaaaaggacagaaaggatctccaggctttccaggaccatcaggt
gaccctggtccaccgggctatggtggctttccaggtgacagaggagatcctgggtaccca
tctgctgggcctccaggagaacctggtccaaagggagatccaggccccccaggagttttg
ggcagcaaaggagaaaaaggatcccaaggtcatccaggacgtaaaggagtaccaggacca
catgggatcagaggggaaactggaagtccaggaatcccagggaagcctggacgtcctgga
gatactggtgttaaaggacggcagggccaaccaggacaacagggcattacaggccctcct
ggtgctgttggagaccctggaaaaaatggacttgttggtgaaagaggtaatcaaggtcag
gatggtatgcctggtcccccaggagtaaagggagaaccaggagcaccagggagaggaatc
cctggccttcgaggtattcctggtcgtagaggaatcaaaggggacatgggactgcctggt
tttcctgggccaccaggtatgaaaggtcatcggggtgatcaaggacccgttggacctcct
ggcttagtggggttacctggatttcaaggtgcaacaggcatggcgattactggccaaaaa
gggaatagaggtattgctggtgcagatggaagaccaggtgctcctggttttccagggcct
cctggtcttcccactcccagcatgaaaggaagcaaaggtgttagaggtgcagatggcata
ccagggccaacaggcccagccggtgacattggtcctcctggtccaaaaggaatagaaggt
cgatcaggttatccaggtgctagaggggaccctggatttcttggattcccaggtgtgaaa
ggagaaaagggtaatcaaggaccccctggaccaccaggtgcagaagggccaaggggacca
aagggccagcacggtccacctggagtccctgggagaatattctctgtcccaggaagcaag
ggtcctcctggactgccaggaatcccaggaacaccaggtgatcaaggaattcaagggatt
cctggactacaaggacctaaaggagtaaaaggtctaccaggaagttttggtcatccaggt
caaccaggactgcctggtccaaaaggagacaggggatttccaggacaaagagggcaacct
ggactgattggctttccaggtctacaggggttacctggatcaccaggtactatcactgct
ggtccaacaagaagaggttttatctttacccgacatagtcaatcaacaaagattccttca
tgcccacgtgggacatcgcagatctatgttggttattcgctgctttttgtacaaggaaat
gaacgagcacatggacaagatcttggaacagctggtagctgcttgcagaggtttaccacc
atgccattcttattctgtaacaccaatgatgtttgtagttttgcttctcgcaatgactat
tcatactggctgtcaactgcagcagtaatgccagtagacatggcaccgatttctggcagg
gcactagagccccatataagcaggtgtgttgtctgtgaaggagctgcaatggtaatagca
gttcacagccaaacaactgtagttcctgcatgtccagaaggctggatatctctctggaag
ggtttttcttttgttatgtatacaagtgccggctcagaagcttctggccaagcattggca
tctcctggatcttgtttggaagaatttcgagccatcccattcatagagtgccatggcagg
gggacgtgcaactactacacaaattcctacagtttctggttggcatcgttaaatccaaga
agaatgttcaggaaacctctgccacagactttgaaagcaggagaactagaaaatatcatc
agccgttgtcaggtctgcatgaagagaccagtgtaa
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integrated database retrieval system
