Gymnogyps californianus (California condor): 127022439
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Entry
127022439 CDS
T08687
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
gcl
Gymnogyps californianus (California condor)
Pathway
gcl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gcl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127022439
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gcl03019
]
127022439
Enzymes [BR:
gcl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
127022439
Messenger RNA biogenesis [BR:
gcl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
127022439
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
T6PP_C
NCBP3
RRM_1
Motif
Other DBs
NCBI-GeneID:
127022439
NCBI-ProteinID:
XP_050761992
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All DBs
Position
15:complement(12192445..12257024)
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AA seq
638 aa
AA seq
DB search
MEVIRSNFKDNLNKVCEAIEESDFLAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKH
SMDFLLFQFGLCTFKYDHTEEKYIMKSFNFYIFPKPFNRSSPDVKFVCQSSSIDFLANQG
FDFNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAGSLSYISPNATKCPVTIPEDQKKF
IEKVVEQIEDLLKNEENESLELEPCTGFQRKLIYQTLSWKYPKGIHVETLESDKKERYIV
ISKVNEEERKRREQQKQAKEQEELNDAVGFSRVVHAIANSGKLVIGHNMLLDVMHTIHQF
YCPLPDDLSEFKEVTSCVFPRLLDTKLMASTQPFKEIINNTSLAELEKRLKEVPFSPPKV
ESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANFLGSFLSPPKNHVSARSKLIEPFFN
KLFLMRVMDIPYLNLEGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQVSWIDDTS
AFVSLSQPEQVQIAVNTSRYAESYRIQTYAEYVEKKHEEKQAKRKCTEDSWKEMERKRLK
TQCTPYVSQSRYYCVNSFTGTSTVGKRSMSPIQEETGSDDTEEGEGQDPEYDQTDSCAES
LPDGKKRAKKFKKIKTEQVPAGSLTTSSTGIFEVPETW
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgatcagaagcaattttaaggataacctaaacaaagtatgtgaagctattgaa
gagtcggacttcctggccattgatggggagttttcagggatcagtgatgggccttctgtt
agtgcattaaccaatgggtttgacactccagaagagaggtatcagaaacttaaaaagcat
tccatggattttttgctctttcagtttggcctttgcacttttaaatatgatcacacagaa
gaaaagtatataatgaagtcatttaatttctatatttttccaaaaccctttaacagaagt
tcaccagatgtcaagtttgtctgtcagagttcaagtatagattttttagcaaaccaagga
tttgattttaataaagtttttcgcaacggaattccatatttaaatcaggaagaagaaaga
cagctgagggaacagtatgatgaaaaacgttctcaggccaatggtgcaggatctctgtca
tacatttctcctaatgctacaaagtgtcctgtaacaattcctgaagatcagaaaaaattc
attgagaaagtagtggaacagatagaagacttattaaagaatgaagaaaatgaaagtttg
gaactggagccatgtacaggatttcagaggaaattaatttatcagaccttgagctggaag
tatccaaaaggtatccatgttgaaactctggagtcagataagaaggagagatatattgtt
attagtaaggtaaatgaagaagaacgaaaaagaagagaacagcagaaacaagcaaaagaa
caggaggaattgaatgatgcggtaggattttccagagtcgttcatgccattgccaattct
ggcaagcttgttattgggcacaatatgctactggatgttatgcataccatacaccagttc
tattgtcccctccctgatgacctaagtgagttcaaggaagtaacatcatgtgtctttccc
cggctattggatactaaactgatggcaagtacacaaccttttaaggagatcattaataat
acatcccttgcagaactggaaaagcgtttaaaagaggttccattcagccctcctaaagtt
gaaagtgcagaagggtttccaagttatgatacagcttccgaacaacttcacgaagcagga
tatgatgcttacattactggactgtgcttcatctccatggctaatttcctaggttcattc
ctcagtcctccaaaaaaccatgtgtctgctagatcaaaactcattgaacctttttttaac
aagctatttcttatgagagtaatggacataccatatctcaatttggaaggaccagacttg
cagccaaagcgagatcatgttcttcatgtgacttttcccaaagagtggaagactagtgac
ctttaccagcttttcagtgcctttggtaacattcaggtttcgtggattgatgatacatca
gcatttgtatcattgagccagccagaacaagtacaaatagctgtaaacaccagcaggtat
gctgaaagttataggatccagacatatgcagaatatgttgagaaaaaacatgaagaaaaa
caggcaaagagaaaatgtacggaagatagttggaaggagatggagagaaagcggttaaaa
actcaatgcacaccttacgtttcccagagtcgatactactgtgtcaacagttttacaggt
accagtacagtaggaaagagaagcatgagtcctattcaggaagaaaccggttctgatgat
acggaagagggagaaggccaagatccagaatatgatcagacagactcctgtgcagagtcc
cttccagatggtaagaagagagccaaaaagttcaaaaagatcaagacagaacaagttcca
gcaggaagcctcacaactagttccactggaatttttgaagtccctgaaacatggtag
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