Gymnogyps californianus (California condor): 127023278
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Entry
127023278 CDS
T08687
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(XX) chain
KO
K24357
collagen type XX alpha
Organism
gcl
Gymnogyps californianus (California condor)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
VWA
Collagen
Pur_ac_phosph_N
Ig_DSCAM-DSCAML_C
VWA_2
CBM_4_9
DUF4998
Motif
Other DBs
NCBI-GeneID:
127023278
NCBI-ProteinID:
XP_050763297
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All DBs
Position
17:15081465..15130530
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AA seq
1473 aa
AA seq
DB search
MLIHTCFFFACLPVASYVWGRVGQGSGRLKLTVLSEDRLQMKWKETEGNINGYKVRVKPM
AGDSEQEVMLKTKTPKATXGGLSPTKEYMLQVYVLNGSQEALFAKRKFVIEELKNASQTR
NNRRNSGAASGKNLTSSGSSAAEHSGVAEATPPPLNTVLTQPAKDRAEKKRQKGTQPKGS
GETTRNQPSAEASMTEATPTTTRSSQRTPANSGRESPGKQKPTKDSLRRGSQFQCDTSAM
TDIVLLVDGSWSIGRNNFKLIKEFLSNLISPFSIAQDKIRVGLSQYSSDPRTEWDLSAYS
TRDQVLEAVRNLRYKGGNTFTGLALTHVLEQNLKPGAGARLEAEKLVILLTDGKSQDDAN
LAAQTLKNLGIEIFAIGVKNADEAELKQVASEPLELTVYNVLDFPLLSSLVGRLTRILCT
RIKEKSNKENTGSTVKDVPVNTGPQLSPTDLKISAVTSKSMHLTWSPPLRPPKKYRIVYY
PSKGGIPKEVVLDGAVSSLRLSNLTSHTEYLVSVFPIYDTVVGDGLRGVTSTLPLSSPRS
LRVSELSHNSIRLSWKAAQGATQYLVLCSAAPDGAEDYTTEVKVAQPEVLLDGLSPSTEY
SVAVYAMYGEDASDPASIQETTLALSPPRYLSFSELSHASVRVSWEAASPAVKAHHVTYV
SSRGSNAGEVEVPGTATSTVLRPLSSLTQYFISVRSTYDEGDSFPITGNVTTLKVPPPRA
LKVTELSGNSLRLQWEAVAASDVVVYQIKWSTVSGEKPQELSIAGNVATAVLPGLQKNTD
YKISIWAYYKDGARSDTVSIQHRTNSRSPPTNLFIDSETPTSLQVHWTPPDGRIQHYKIT
YSPVSDAGAQQTIMASGKSSSVTLQSLLPDRAYKVILSAIHYTGESESTSTTGRTAPVLS
KFPSIRGFVPSKTEACPTISNTEGSVRGFDMMEAFGLVEKEYASIKGVAMEPFVFSGSRT
FTLFRDTQLTQRTSDVHLFAIPPEHTISILLRLLPETPKEPFAVWQITDEDFQPLLGVNL
DPSKKSLTYFNHDYKADLQEVSFDQQEVKKIFYGSFHKVHVAVSHFKIKLYLDCKKIAEK
PINTVGSISTAGFIMLGKVTRTRGPRSGSASFQLQSLQIMCSSXGAEEDRCCDLPALRDE
ETCPTLAPACSCTSGRPGLPGPPGPPGSPGRRGPQGEQGEPGPKGEPGPPGQVGPEGPSG
QQGSPGSQGITVQGPVGPPGIKGEKGDTGSPGMQGIPGVQGAPGRDGLQGAKGVRGLEGT
AGPPGPPGPRGFQGVTGSRGSSGEKGPPGDIGPTGLPGPKGERGEKGEPQSLATIYQLVS
QACERMIQTHVLKFDSFIHEHARKPVPVWEERLKPGEPGPPGPPGPPGSNGERGENGIPG
QPGKDGYPGERGAPGPKGEKGMSGASEEGIQGPRGRTGPPGEVVLGKPGPKGHPGNAGPQ
GFPGVRGQPGQSGYPGGCDISGCYGAGRRDFIP
NT seq
4422 nt
NT seq
+upstream
nt +downstream
nt
atgctgattcacacttgtttcttttttgcctgcctgcctgtggcgagctatgtctgggga
cgagtgggccaagggtcaggccggctgaaactcactgtcctttcggaagacaggctccag
atgaaatggaaagagaccgaagggaacatcaacggctacaaagttcgggtaaagcccatg
gcaggggactcggagcaagaagtcatgctgaaaaccaagactcccaaagccacangtggg
gggctgagccctaccaaggaatacatgctgcaggtctacgtgctcaacggctcccaggaa
gccctgtttgccaagaggaaatttgtgatagaggagctaaaaaatgcatcccagactaga
aataaccgaagaaactcgggagctgcgtcaggaaagaatctcacctcttcggggagctca
gcagctgagcatagcggggtggcagaggccaccccaccgcccctgaacaccgtcttgaca
cagccagcaaaggacagagctgaaaagaaaaggcagaaggggactcagccaaagggctca
ggagaaaccacaagaaaccagcccagtgcggaggccagcatgacagaagcaacaccaaca
accaccagatcatcccagcgcactcctgcaaactcggggcgagagtctccaggaaaacaa
aaacccacaaaggattcattgaggcgaggttcccagtttcagtgcgacacatctgcaatg
actgatatcgtcctgcttgtggatggatcctggagcatcggacgcaacaatttcaagctc
attaaggagtttctgagcaatttgatttccccattcagtattgcccaagacaagataaga
gtagggctgtcccagtacagcagcgatccccgcacagagtgggatctgagcgcttactct
acaagggaccaggtgctggaggccgtgaggaatttgcggtacaagggcggcaacaccttt
acaggtctggcactgacccacgtcctggagcagaatctgaaaccaggtgctggtgcccgg
ctggaggctgagaagttggtaatactcctaactgatggaaaatcccaggatgatgccaac
ctggctgctcagaccttgaaaaacttgggcatagagatatttgccattggggtgaagaac
gcggacgaggcagagctgaagcaggtggcctcggagccgctggagctcactgtgtacaac
gtgctggatttcccactgctgagctctctggttggcaggctcacccggatcctgtgcacc
aggatcaaagagaagagcaacaaggaaaacacaggcagcactgtgaaagacgtccctgtg
aacacgggtccccagctgagcccaactgaccttaaaatatcagctgtgacctctaagagc
atgcacttgacctggagtcctcctctgagaccaccaaagaaatatcggattgtgtattat
ccatctaagggtggtatccccaaagaggtggttttagacggagcagtctcctctctgcgg
ctttccaatttgacttcgcacacggagtatctggtgtcggtgtttcctatttatgacaca
gttgttggggatgggctgagaggcgtcacctccacattgcctttgtcttcccctcgctcc
ctgcgtgtctctgagctaagccacaacagtatcaggctgagctggaaggcagcccaggga
gccacgcagtacctggtgctctgctccgcagcccccgacggagcagaggactatacaaca
gaggtgaaggtggcccagcctgaggtcctgctggacgggctgtcgcccagcacggagtac
tctgtcgcggtgtatgcgatgtatggggaagatgcaagtgatccagccagcatccaggaa
accaccctggccttgagtcctcccaggtacctgagcttctccgagctcagccacgcgtcc
gttcgagtcagctgggaggctgcatctccggccgtgaaagctcaccacgtcacctatgtt
tctagcagagggagcaacgctggggaggtggaggttcctggcactgcaacatccactgtc
ctgagacctttgtcctccctcacccaatacttcatcagtgtcagatctacgtatgatgaa
ggggactcctttccaattactggcaatgttaccaccttaaaggtccccccgccgcgtgca
ctgaaggttaccgagctctctgggaacagcctccgactgcagtgggaagctgtcgctgcc
tccgatgtggttgtctatcagatcaaatggagcacagtcagtggagagaagcctcaggag
ctctccatcgctggaaatgtggcaactgctgtcctgccaggcttgcagaagaacactgac
tataaaatatccatctgggcctattacaaagacggcgctcgaagtgacacggtttctatt
cagcacaggaccaattcccggagcccacccaccaacctcttcatcgactctgagaccccc
accagcctccaggtccactggacccctcccgacggccgcatacagcactacaaaatcacc
tacagccctgtttctgatgccggtgctcagcaaacaatcatggcttctggcaaaagcagc
agcgtgaccctgcagtcgctgctgcctgatcgagcctacaaggtgatcctttctgccatc
cactacacaggggagagcgagagcacgtccacaacaggccggacagctcctgtgttgtct
aaattcccttcaatacgaggattcgttccatctaaaacagaggcctgccccaccatcagc
aatactgaaggctccgtacgaggatttgatatgatggaagcttttggcttagtagagaag
gaatacgcctccattaaaggcgtagctatggagccattcgtattcagcggttcccgtacc
ttcaccctgttcagagacactcagctcactcagaggaccagcgatgtccacctctttgca
atcccacccgagcacaccatcagcatcctcctgcgcctcctgcccgagacccccaaggag
cccttcgctgtgtggcaaataacagacgaggacttccagccccttcttggtgttaacctt
gaccccagtaagaaatccttgacctatttcaatcatgactacaaggctgatttacaggaa
gtctcctttgaccagcaggaagtgaagaagatattctatgggagctttcataaggtgcac
gtggccgtgagccacttcaagatcaaactctatctggactgtaagaaaatagcggagaaa
cctatcaacactgtcggcagcatctccaccgctggcttcatcatgctgggaaaagtgaca
aggaccagaggacccaggagcgggtctgcgtcgttccagctgcagtctttgcagatcatg
tgcagcagcngtggggcagaggaagacagatgctgtgatctccctgcactgagggacgag
gagacctgccctaccttagctcctgcctgctcttgtacttctggccgcccgggcttgcca
ggacctccagggccccctggcagccctgggaggagaggacctcaaggggagcagggggag
ccaggacccaagggtgaaccaggcccacctggacaagtagggccagagggtcccagtggc
caacaaggctctccaggttcccagggaatcacggttcagggtcctgtgggaccaccagga
attaaaggagagaaaggagacactggaagtcctggcatgcagggcattcctggtgtgcag
ggagctccaggcagggatggtcttcaaggtgcaaagggggtgaggggactagaaggcaca
gcggggcctccaggacctcctggaccaaggggtttccaaggagtgacaggctcccgaggc
agcagtggagagaagggacctccaggtgacattgggccaacagggctgccgggtccaaaa
ggagaaagaggagagaaaggggaaccacagtccttggccacaatttaccagcttgttagc
caggcttgtgagcggatgattcaaactcatgtgttgaaatttgactcattcattcacgaa
catgcaaggaagccagttcctgtttgggaagaaaggttaaaaccaggagaaccaggacca
ccaggtcctccaggtccccctgggagcaacggagaaagaggagaaaatggcatccctgga
cagccaggcaaagatgggtatcctggagaaagaggtgccccagggcccaaaggagaaaaa
gggatgtctggagccagcgaggaagggatccaaggacccagaggcagaacaggcccacca
ggagaagttgtgctggggaaaccaggtccaaaaggtcaccctggaaatgccggtcctcaa
ggttttcccggtgtcagagggcagcctgggcagtctggatatccagggggctgtgatatc
tctggatgttatggggcaggtagaagagatttcatcccctga
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