Gymnogyps californianus (California condor): 127023538
Help
Entry
127023538 CDS
T08687
Name
(RefSeq) probable helicase senataxin
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
gcl
Gymnogyps californianus (California condor)
Brite
KEGG Orthology (KO) [BR:
gcl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gcl03021
]
127023538
Enzymes [BR:
gcl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
127023538
5.6.2.5 RNA 5'-3' helicase
127023538
Transcription machinery [BR:
gcl03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
127023538
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SEN1_N
AAA_19
AAA_30
Viral_helicase1
UvrD-helicase
AAA_22
SLFN-g3_helicase
AAA_16
nSTAND3
DUF4164
Motif
Other DBs
NCBI-GeneID:
127023538
NCBI-ProteinID:
XP_050763622
LinkDB
All DBs
Position
18:complement(7685672..7716880)
Genome browser
AA seq
2825 aa
AA seq
DB search
MSTCRWCTPSGSDTTEFLKSYAFKRLSPEDLEGSNDDLCYCLECVVEYHKAREKLPRLHE
VLWELETSRLVAHIEKSMRGEAGEDDELFIVDENGETQLSGYVGPDFENNLRVPLLEILK
YPYLLLHEKVSELCVEVLCRMEQSHNSFQVFEKYPGIYLFLVHPNEAIRRWAILTARNLG
KVDRDDYYDLQEVLTCLFKVIELGLFESPDIYSSSMIEKGKLILLPSHLYDTANYKNYWL
GICMLLTVLEEQAMDSLLLGPDKQNDFMQSILNTMEKEAADDSTDPFWPALRCFMVILDQ
LGSKVWGQLIDPVQAFQTIINSVSYNNEIKNIRSSFKRTKSEPESDYNDDMVTCSQIVYN
YNTEKPQKDTGWKTAICPDYCPNMYEDMQTLANVLQSDIGRDTRVHDSTFLWFIPFVQSL
MGLNDLGVAYIVEVIHYLCSEIKDILNERIQQCDKISEFFLLILVSIIELHRNKNCLHLL
WISSQEWVEAVVRCAKLPAVAFTRCTEKASGHYARGSSAVSLQASNSVQHACVQLIRSLL
REGYQIGQHALCKQYLDKLNLLLRGNLSLGWQLNIQETQELQMCLKQVVRSIKDRALNTS
VPVGNNANSTTLPTISIKQEKSARGDGCKMSVHGRGDPYSPFGVMSKEGGDGDCQENPFP
RRKSASEEECRDASKSSRSWTPTEGLLVNNKKELNELTTQEYVYPQNSLATKVCGKVQEN
RSNDLVAGKCDTDNQCFNPNAQCSDFRRGGELENKCEAGSVTPIRLAAQTRIGSPEHVYS
SDVKESNMSPSSSSKFKVDAHRLMNLKNMVQKTEWLSKVSRPAKPCDLKNCSLATSASKA
DVEQPKFRTGYLCTSKDCRRHQGVNTVCENEISVDTPSSRSCESTQEKSVNSAFQSRLVP
TKQVSKETPPDSSSSSKNEPGMQENEDDSILLSGISDTLLTKVSTEEKSSLLLKSVFKKD
TDKQTSDREQPNLNNLVKYDCKGQISKTFCMDKASANGRVPSSSENKRDISNPASQIRPL
SMKRESSDRLFEFSEYFKRENNSGGKEEEDFAKMVSEDNTSTDSQVDRELSKLSLAAYAK
SVNFPFDSGQESSAHHNVCDIKRKVKGAVRSSNDGQSTKSPCDADCHDNQVIIISDSSDE
EEGGADKEETKKENEKVCPEKQPSTSSCISDSDSKIESKTPSSPLSLEDCESQYFEFETE
VDVFSVWQDTQAYSMEATQEYKQDHVSTSVDSSNSDDLVNDHTNEWGYDVDYISDDTMGE
EANLIEKQTENIPHQKEADNTEEVTNSMLQESISKGNAKDQLGNFADKGTVAKDFTLDPK
LTEPRASTSNISLASKLALKKNSASPRKNIAKSKVARTIQRSPKKPPVLKTAQNKKLLQS
TSKNSQPGRSMPAVVPPRKVRQCPAPASTVEKLGLKKAPRKAFDLSQRSLESLAQLRSYG
KAAGRVGEKQKIKVIAPQSLSIKHNKKLLACQDLQFLRQTRPKKSVRVKNPEGGSESRNK
KVSKMDAKSMKQKPKSFEPACVEGSVENQREKKREESVCPSARERTFESLSVEEETCVSK
MPSSSDSNRKSEADSVMVPPVPMDSSLSSAALVGDDKDEPSGKGCIVQPECEKTMSKENG
CKPNENSEDDDDLFLTQLDPVDMELCSEEESVQDTTIASKEPEEVDTAESLQQNESSTIV
KCKYKDCMEKVEKPGEYCSKHSATSSEADHLFAKPSLLPPSKTRKPSTTKIFSSASSSRN
AAFSKDLEDVKKLPPPSKSKVNAAKPVMVRPPNAKAIPTGNQTCKSPSFSNVPQPRISNN
VLQSQNRQNDNASNISRRPARDTYYSSFLGAQQRGHRIFVNEVLQWTRDMFAKFSQFGPP
NNLLQSVVGSVPVRFQGYNDYFNTFFSLMMLNAFETLAQEWIENQRVREKSYYFHLQNFC
ADLNTADFTADFQESDLARQLHPKEDDLIFLVVQKKKDAFGEESEMENHTVNHVGLVTRF
SRASGCLTRQKEQHTICHLSVQTRGNLSFFINKQVKCVVVGSLVTTHRMFKGLLLLSRSP
LAKPIINPSYDDFCPRDLPVASESAAPDMNEYNENQKRAIETAYAMVKQHPGLPKICLIH
GPPGTGKSKTIVGLLSRVLRENIRNEKTTRKTNSKIKPNRFLVCAPSNAAVDELMKKIII
AFKEKCQNRQEPLGNCGDINLVRLGAEKAINSEVRGFSLDKQVEHRMKRKPADCDQDIQK
KKAALDEKLDVLSRQRAMHRCEKRESQMLDDEIGRLSKERQQLASQLKEVRSHSQKVQAD
IILEADIICCTLSTSGGSLLESAFWRQGLDPFSCVIVDEAGQSCEVETLIPLIHRCNKLV
LVGDPRQLPPTVKSVKAQEYGYDQSLMARLHRHLEEQVQKNILRSLPVVQLTVQYRMHPD
ICLFPSNYVYGRTLKTDKATEENRCSSEWPFQPYLIFDVGDGREERDNDSFSNPQEVKLV
MELIRTIKEKRKDLGLRRIGIITPYSAQKKKIQEQLDRVFRNNSPGEVDTVDAFQGREKD
CIIVTCVRANSTKGSIGFLASLQRLNVTITRARFSLFILGRLKTLMENKDWNELIQDAQK
RGAIIKTSEKTYRKDAVKILKLKATVQPPAKAGTKKSLLQACSSSSKRAELANPREASSP
WELPAGAGHAVPQGSRGPQQAQGAQAADSRRGSASAPVEAAALPADQEKPRDPRLASMAS
RTETKGKEQASKDSSRSAQSNPGSTSQQGLDVSSAARDQVSRTETSKKPQQTMGQCNVPS
TSPYAARHEGDRRASVSKSSSKAHSEGGQSNSSKWNKDSRVLTRRTSEELPENRESSAKR
RKTFH
NT seq
8478 nt
NT seq
+upstream
nt +downstream
nt
atgagcacatgtcgatggtgtacacctagtggttctgacaccactgagttcctgaagagc
tatgcttttaaacggctgtccccggaagatcttgaaggatccaatgatgatctctgttac
tgcctggagtgtgtggtcgaataccacaaagcaagggaaaaattgccaaggttgcatgag
gtcttgtgggagttggaaacctcccgtcttgttgcccacattgagaaatccatgagagga
gaagctggagaagatgatgagttgtttatagtggatgagaatggagagacacagctgtct
ggttatgtgggcccggattttgagaataacctgcgagtgccccttctagaaatactgaaa
tatccatatctgctgctgcatgagaaagtcagtgagctgtgtgtagaagtgctctgtaga
atggaacaaagtcacaactcctttcaggtctttgagaaatatccaggaatttatctcttt
ttggtgcacccgaatgaagcgattcgtcgatgggccatcctgacagcaaggaatttaggg
aaggttgacagggatgattactatgacttacaggaagtgctgacttgcttgttcaaagtt
attgagttggggctttttgagagtccagatatttacagctcttcaatgatcgaaaagggt
aaactcatccttctgccgtctcatttatatgatactgccaactacaagaactattggctc
gggatttgtatgttgctaacagtgctagaagagcaagctatggactccttgttactgggc
ccagacaaacaaaatgatttcatgcagtctatacttaacaccatggagaaagaagcagct
gatgattctactgaccccttctggccagcgctgcgttgtttcatggttattttggatcag
ctcggatctaaagtatggggtcagcttattgatcctgtccaagcctttcaaaccattatc
aacagtgtgagctacaacaatgaaataaaaaatatacgcagtagctttaagaggacaaaa
tctgaaccggagtcagactacaacgatgacatggttacttgcagtcagattgtgtataat
tataacacagaaaagcctcaaaaggatactggatggaagactgccatttgtccggactac
tgccccaacatgtatgaggatatgcaaacactggctaacgtgcttcagtctgatattggc
agagatacgcgtgtccatgacagcacgtttctgtggttcatcccgtttgttcagtcgctt
atgggtctcaacgacttgggtgtagcatatatagtagaggtcattcactacctctgctcg
gaaatcaaagatattctcaatgaaagaatccagcagtgtgacaaaatctctgaatttttt
ctcctgatcttggtgtcgattattgaactacacagaaataaaaactgcctgcatttgcta
tggattagctcccaagaatgggtggaagcagtggtgagatgtgctaagcttccagctgta
gcatttacacggtgcactgaaaaagcatctggacactatgcgagaggttcatcagcagta
tctttacaagcttctaactccgtgcagcatgcctgtgtgcagttgatacgcagccttctt
agagaaggctatcaaattgggcagcatgctctttgcaagcaatacctagacaaactcaat
cttcttctgcgaggaaatctatctttaggttggcagctgaacatccaggaaacccaggaa
ttacagatgtgtttaaagcaagttgtaagaagtataaaggacagagcattgaatacctct
gtgcctgtaggaaacaatgcaaactctacaactttgcctaccatttctataaaacaagag
aagagtgcacgtggtgatggatgtaagatgagtgtacatggcagaggtgacccttattca
ccattcggtgtcatgtcaaaggaaggtggagatggagattgtcaagagaaccctttccct
agaagaaagagtgcctcggaagaggaatgtagagatgcatctaaaagttcaagatcttgg
acacccacagaaggcctcttggtgaataataaaaaggaacttaatgaattgacaactcag
gagtatgtctacccacagaactctttggcaacaaaagtatgtgggaaggttcaggaaaac
aggagcaatgatcttgtggcagggaaatgcgatacagataatcagtgctttaatccaaat
gcccagtgctcagatttcagaagaggtggggagttggaaaacaaatgtgaagcaggatcc
gtaacaccaatacgtctggctgctcaaacccgtattggttctccagaacatgtttacagc
tcagatgtaaaggaaagcaatatgtctcccagttcctcttcaaagtttaaagtagatgca
catagactcatgaatttgaaaaacatggtacagaaaactgaatggctctcaaaagtatcg
cggccagcgaagccatgcgacttgaaaaactgcagtttagcaacaagtgcttcaaaagcg
gatgtagagcaacctaagtttcgcactggctatctgtgtacaagcaaagattgtcgtaga
catcagggagtgaatactgtgtgtgaaaatgaaatctctgttgatactccatcttcaagg
agttgtgaaagtacacaggagaaaagcgtcaacagtgcttttcaatccagactggtcccc
actaaacaggtatcaaaagaaacaccaccagattcctctagctcctctaaaaatgaacct
ggcatgcaggaaaatgaagatgacagtattttgctttcagggattagtgacaccttactg
acaaaagtatccactgaagaaaaatcaagtttgttgttgaagtctgtgtttaagaaagac
actgacaagcaaacttcagaccgggaacagcctaatctaaataacttggttaaatatgac
tgtaaaggtcaaatttcaaagacattttgtatggataaagcttcagcaaatggtcgtgtt
ccatccagctctgaaaacaagagggatatatccaaccctgcttctcagatcaggccacta
tcaatgaagcgtgaatcaagtgacaggttgtttgaattttcagaatatttcaagagagaa
aacaattcaggggggaaggaagaggaggattttgcaaagatggtttctgaagataatact
tcaacagactcccaggttgatagagaactcagtaaattatctttagctgcgtatgccaaa
agtgtcaactttccctttgattcaggccaagaaagctcagcacatcataatgtatgtgat
attaaaaggaaagtgaaaggtgctgtaagatcttccaatgatggccaaagtaccaagtct
ccctgtgatgcagattgccatgacaatcaagtcattataatttcagactcttcagatgaa
gaagaaggtggggctgacaaggaggaaacaaaaaaagagaatgaaaaggtgtgtcctgaa
aagcagccttcaacttccagctgcatttctgatagtgacagcaaaatagaatcaaagact
ccaagctctcccttgtcactggaagactgtgagtctcagtactttgaatttgaaacagaa
gttgatgtcttttcagtttggcaagatactcaagcgtatagtatggaagcgactcaagag
tataaacaagatcatgtttcaacatctgttgacagtagtaattcagatgacttagtgaac
gatcacacaaatgaatggggttacgatgtggattacataagcgatgataccatgggagaa
gaagcgaacttgatagaaaagcagacagaaaatattcctcatcagaaagaagctgataat
acagaagaagtaactaattcaatgttacaagaatctattagtaagggaaatgcaaaagat
caactggggaattttgccgacaagggtactgttgctaaagacttcaccctggacccaaaa
ttgactgaacccagagcatctacatctaacatctcattagcctcaaagttggcccttaag
aagaatagcgcgagcccacggaagaatatagcaaaatctaaggtagcaagaactattcaa
agaagtcctaaaaaacctcctgttcttaaaacagcacaaaataaaaaactacttcagagt
acatcaaaaaattctcaacctggcaggtcaatgcctgctgtggttcctccaaggaaagtt
cggcagtgtcctgcaccagcatcaactgtagaaaaacttggtctgaagaaggcaccccgc
aaagcatttgatttatcccagcgctctttagagagtctagctcagttgcgcagctatggt
aaagctgcagggagagttggagagaaacagaagattaaagtaattgctcctcagagtttg
tctataaagcataataaaaaattgctagcctgccaagaccttcagtttttaaggcaaaca
aggcccaaaaaaagtgtcagagtgaaaaatcctgaaggaggttctgagagtagaaacaaa
aaagttagcaaaatggatgcaaaatctatgaaacaaaagcctaaaagttttgaaccagct
tgtgttgaaggatctgttgaaaaccaaagagagaaaaaaagggaggagtctgtttgtccc
tctgccagggagagaacatttgaaagcctctctgtggaggaggagacatgtgtctctaaa
atgcctagttcttcagactcgaacagaaaatcagaggctgacagtgtgatggttcctcct
gtacctatggattcaagtctctcttccgctgcacttgttggagatgataaagatgaacct
tcaggaaaaggttgcattgtccagcctgagtgtgagaagacaatgtcaaaagaaaatggg
tgtaaaccaaatgaaaacagtgaagatgatgatgatttatttttaactcagttagatcct
gtggatatggaattatgttctgaggaggaaagtgttcaagatactactatagctagtaaa
gaaccagaggaagtggatactgctgaaagccttcagcagaatgaatcctcgactattgtg
aaatgtaagtataaagactgtatggaaaaagtggaaaaaccaggagagtactgtagtaag
cattcagccaccagctcagaagcagatcacctgtttgccaaaccttctctcctgccacct
tctaaaacaagaaagccttccactacaaaaattttcagctcagcaagttcttcacggaat
gcagccttcagcaaggatcttgaagatgttaaaaagctgccaccaccttcaaaaagcaaa
gtgaatgcagcgaaaccggtgatggtcaggccaccaaacgcaaaggctataccaacagga
aatcaaacatgcaagtctccaagtttcagtaatgtacctcagcctcgtatttctaataat
gttctccagtcacaaaatagacagaacgacaatgcttcaaatatttccagaaggcctgcc
cgagacacctattattcttcctttcttggcgctcagcagcgtggtcataggatttttgtt
aatgaagtcctacagtggactcgtgatatgtttgcgaagttcagccagtttggacctcca
aataatctcctgcagtcagtagtaggctctgttcctgtccgatttcagggatacaatgac
tattttaatacatttttctccttgatgatgctaaatgcctttgaaacactggcacaagag
tggatagaaaaccagagagtgagagagaagagttactacttccacttacagaacttctgt
gctgacttgaatacagcagattttacagctgattttcaagaaagtgatttggcaaggcag
cttcatccaaaggaggatgacttaatctttttggtggtccaaaagaaaaaagacgccttt
ggggaagaaagtgagatggagaaccatacagtgaatcacgttggtcttgtgacacgattt
tctcgtgcatctggctgtttaactagacaaaaggagcagcataccatctgtcatctttct
gtgcaaactcgaggcaatttgtcattcttcataaataagcaagtgaagtgtgtggtggtt
ggctccctggtgaccacacaccgaatgttcaaaggcctactactattgagcaggagtccc
ctggctaaacccatcataaatccaagttatgatgacttctgtcccagagatttgcccgta
gcttcagaaagtgctgcaccggatatgaacgaatacaatgaaaatcaaaagagagccatt
gagacagcgtatgccatggtaaagcaacatccaggacttcccaaaatctgcctcatccac
ggaccacctggaacagggaaatcaaaaactattgttggacttctgtctcgtgttttgaga
gaaaacattaggaatgagaaaacaactcgaaaaacaaattccaagatcaagccaaaccgt
tttctagtttgtgcaccatcaaatgctgctgttgatgaactcatgaaaaagatcatcatt
gcatttaaggaaaaatgccaaaacagacaggagcctttgggaaattgtggtgatatcaac
ttagtgcgacttggtgctgaaaaagcaatcaacagtgaagtccggggatttagcttggat
aagcaagttgaacatagaatgaaacgaaagccagctgactgtgaccaggatattcagaag
aaaaaagcagctctggatgaaaagctggacgtgctgtctcgtcagcgtgccatgcacaga
tgtgagaagagggagagtcaaatgttagatgatgaaattggcagactttcaaaggagaga
caacagcttgcttctcaactaaaggaggttcggagccactctcagaaagtacaggcagat
atcatcttggaggccgacatcatctgctgcacactgagcacaagtggaggaagtctgctg
gaatctgctttttggcggcaaggacttgatcctttcagctgtgtcattgtggatgaggca
gggcagtcctgtgaggttgaaacactgattccactgatccatcgctgtaataaacttgtc
cttgttggagatcccagacagctccctcctactgtaaaatcagtaaaagctcaggaatat
ggctacgatcagtccttgatggcccgcctgcacagacacctggaggagcaagtgcagaag
aatattttacgaagcctgccagttgtgcagctgactgtgcagtacaggatgcaccctgac
atctgtctcttcccatccaattatgtttatggcaggactctaaagactgacaaagcaaca
gaagagaacagatgttcttcagagtggccattccagccctaccttatttttgatgtagga
gacggtcgtgaggagcgagacaatgactcttttagtaatcctcaggaagtgaagctggtg
atggaattaattagaacaattaaagaaaaaaggaaggatctgggtcttcgtcgcattgga
ataattaccccttacagcgcacagaaaaagaaaattcaagaacaactggacagagtgttt
aggaataacagcccaggagaagtggacacagtggatgcattccagggacgagagaaagac
tgcatcatagtgacatgtgtccgggcaaacagcactaaagggtcaattgggtttctggca
agtcttcagcgtctgaacgttacaattacccgagccagattcagcctcttcatccttgga
agactgaaaacgctcatggaaaataaagactggaatgagttgattcaggatgctcagaaa
agaggtgccattatcaagacatcagaaaaaacctacaggaaagatgctgttaagattttg
aagctcaaggcaacagtacagcccccagccaaagcagggacaaagaaatctctgttgcag
gcttgttcttccagtagcaagagggctgagcttgcaaatccgagggaggccagcagcccg
tgggaactccctgctggtgctggccacgcagtgccacaaggaagcagagggccccagcag
gcacagggggctcaggctgcagactccaggagaggcagtgcctctgcacccgtggaggct
gcagcgcttcctgctgatcaagagaaaccgcgggacccaaggctggcaagtatggctagt
agaactgaaacaaaagggaaggagcaggcctcaaaagacagcagtcggtcagcccagagc
aatccaggatcaacgtcgcagcaaggccttgatgtgtcctcagctgccagggatcaggtt
tccagaacagaaacttctaagaagccccagcaaacgatgggacagtgcaacgtgccttcc
acgtcgccttacgcagctcggcacgagggtgaccggagagcttctgtatcgaaaagcagt
tcaaaagcccacagtgaaggaggtcagagtaatagcagtaagtggaacaaagactctcgt
gttttaacgaggagaacatcagaggaattgccagagaacagagaatcaagtgccaagcga
agaaagacctttcactga
DBGET
integrated database retrieval system
