Gymnogyps californianus (California condor): 127023900
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Entry
127023900 CDS
T08687
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
gcl
Gymnogyps californianus (California condor)
Pathway
gcl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gcl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127023900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gcl03041
]
127023900
03009 Ribosome biogenesis [BR:
gcl03009
]
127023900
Enzymes [BR:
gcl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
127023900
Spliceosome [BR:
gcl03041
]
Complex A
U1 snRNP components
U1 related factors
127023900
Complex B
127023900
Ribosome biogenesis [BR:
gcl03009
]
Eukaryotic type
Pre-60S particles
Helicases
127023900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
P68HR
ResIII
Helicase_C_2
Cas3-like_C_2
ERCC3_RAD25_C
BNIP2
Motif
Other DBs
NCBI-GeneID:
127023900
NCBI-ProteinID:
XP_050764170
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All DBs
Position
19:4154913..4162090
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AA seq
603 aa
AA seq
DB search
MPGYSSDRDRGFGAPRFGGSRGGPLSGKKFGNPGEKLTKKKWNLDELPKFEKNFYQEHPD
VVRRTVQEVEQYRSSKEVTVRGHNCPKPIINFYEANFPANVMEVIQRQNFTEPTAIQAQG
WPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQ
QVAAEYSRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKTNLRRCTY
LVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKEYVHINIGA
LELSANHNILQIVDVCHDVEKDDKLIRLMEEIMSEKENKTIVFVETKRRCDDLTRKMRRD
GWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSED
YIHRIGRTARSTKTGTAYTFFTPNNIKQVNDLISVLREANQAINPKLLQLIEDRGSGRSR
GDRRDRYSAGKRGGFSSFRERENFERNYGALGKRDFGAKTQNGAYSAQSFSNGTPFGNGF
AAAGMQAGFRAGNPAGAYQNGYDQQYGSNIANMHNGMNQQQYAYPATGAAPMIGYPMPTS
YSQ
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atgcccgggtattccagcgacagggatagagggtttggagccccccgttttggaggaagt
agaggtggacctctctctgggaagaaatttggaaaccctggggaaaaacttacaaaaaag
aaatggaatttagatgagctgcccaaatttgagaagaacttctatcaagaacatccggat
gtagttagacgtactgtgcaagaagttgaacagtacagatcaagcaaagaagtcacagtt
aggggccataactgtccaaaaccaattataaacttctatgaagctaactttcctgcaaat
gttatggaagtaattcagaggcagaacttcactgaaccaactgctattcaggcacaaggt
tggcctgttgcattgagtggattggatatggttggagtagcacagactggatcagggaaa
acgctgtcttacttgttgcctgctattgtgcatataaatcatcagccattcctggagcga
ggagatggacctatttgtcttgtgctggcaccaactcgtgagctggctcaacaagtgcag
caggtagctgctgaatatagcagagcatgccgtttgaagtctacatgtatttatggaggt
gctccaaagggaccacaaattcgtgacttagaaagaggtgtggaaatctgcattgcaaca
cctggaagacttatagacttcttagaagctggaaagaccaatctcaggaggtgtacttac
cttgtccttgatgaagctgacaggatgcttgacatgggatttgaacctcagatcagaaaa
attgtggatcagataagacctgacaggcaaactctgatgtggagtgccacgtggccaaag
gaagtaaggcagctggctgaagactttttgaaagaatatgtacacatcaacattggtgca
ttagaactaagtgcaaaccacaacattcttcagattgtggatgtgtgtcatgatgtagag
aaggatgacaagcttattcgtttgatggaagaaataatgagtgagaaggaaaataaaaca
attgtttttgtggaaaccaaaagacggtgtgatgatcttaccaggaaaatgaggagagat
gggtggccagcaatgggtattcatggtgataaaagtcagcaggagcgggactgggttcta
aatgaattcaaacacggaaaagcaccaatcctgattgctacagatgttgcatccagaggt
ctagatgtggaagatgtgaaatttgtcatcaattatgactaccctaactcctcagaggac
tatatccaccgaattggacgaactgcccgcagtaccaaaacaggcacagcatacacattc
tttactcctaacaatattaagcaagtaaatgacctcatctctgtgcttcgggaggctaat
caagccatcaaccccaaattgcttcagttgattgaagacagaggttcaggtcgttcccga
ggtgatcgacgtgacagatattctgcgggcaaaaggggtggatttagtagttttagagag
agggagaactttgagagaaactatggtgcactaggaaagagagactttggagcaaaaact
caaaacggggcctacagtgcccaaagtttcagtaatggaactccttttggaaatggcttt
gcagctgcaggcatgcaagctggcttcagggctggtaaccctgcaggagcttaccagaat
ggctatgatcagcagtatggaagtaacattgcaaatatgcacaatggcatgaaccaacag
cagtatgcgtatcctgccactggggctgctcctatgataggttacccaatgccgacaagt
tattctcaataa
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