Gymnogyps californianus (California condor): 127024136
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Entry
127024136 CDS
T08687
Name
(RefSeq) probable helicase with zinc finger domain isoform X1
KO
K25168
helicase with zinc finger domain [EC:5.6.2.-]
Organism
gcl
Gymnogyps californianus (California condor)
Brite
KEGG Orthology (KO) [BR:
gcl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gcl03019
]
127024136
Messenger RNA biogenesis [BR:
gcl03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
Other 5'-3' decay factors
127024136
3'-5' decay
Other 3'-5' decay factors
127024136
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
AAA_19
zf-CCCH
UvrD-helicase
AAA_30
ResIII
PhoH
PAM2
zf_CCCH_4
Mov-10_helical
AAA_22
zf-CCCH_4
AAA_16
AAA_7
Bac_DnaA
AAA_5
Mg_chelatase
Motif
Other DBs
NCBI-GeneID:
127024136
NCBI-ProteinID:
XP_050764543
LinkDB
All DBs
Position
19:complement(3749698..3822074)
Genome browser
AA seq
1942 aa
AA seq
DB search
MADRRPEKSCEQACESLKQQDYEVAVKHCTEALLSLSQYPPAHLPEACQAEIDRIKIETL
LYRIASFLQLKKYGQADEDCRHVLGEGLAKGDGSFRAVLCCMHLKGKLQIVSNVLSKSLM
GESLNGMVTKDLTRLKTLLAETEAAGKVPSGYHVEDLEEGSRDGWQFRPPPRGVTSSEEY
TLCKRFLEQGICRYGAQCTSAHSQEELTEWQKRYASRLIRLKQQKENKQCSGSYMETLIE
KWMNSLSPEKVLSECVEGVRVEHNPELSVTVTTKKSHQTWTFALTCKPARMLYRVALLYD
AHRPHFSIVAISAGDSTTQVSQEVPENCQEWIGGTMVQNGIDHYIYKVSIAFNTEIFGTF
RQTVVFDFGLEPVLMQRVMIDAASTEDLEYLMHARQQLLTTAKRWDSTSKTIVEFEPNET
TELEKSLLTRYQIPLSADQLFTQSVLDKSLTKTNYQSRLHDLLYIEEIAQYKEVSKFNIK
VQLQIVASFMLTGVSGGAKYAQNGQLFGRFKLTETLSEDTLAGRLVMTKVNAVYLLPVTK
EKSAQTQGTKEKVYEAAIEEKTKDYIFLRVSRECCEELNLRADCEMQVELQFQLNRLPLC
EMHYALDRIKDNSILFPDVSMTPTIPWSPNRQWDEQLDPRLNAKQKEAVLAITTPLSIQL
PPVLIIGPYGTGKTFTLAQAVKHILQQQDTSRILICTHSNSAADLYIKDYLHPYVEAGNP
QARPLRVYFRNRWVKTVHPVVHQYCLISSTHSTFQMPQKEDILKQRVVVVTLNTSQYLCQ
LDLEPGFFTHILLDEAAQAMECETIMPLALANKNTRIVLAGDHMQLSPFVYSEFARERNL
HVSLLDRLYEHYPAEFPCRILLCENYRSHEAIINYTSELFYEGKLMASGKQPAHKDFYPL
TFFTARGEDVQEKNSTAFYNNAEVFEVVERVEELRRKWPVAWGKLDDGSIGVVTPYADQV
FRIRAELRKKRLSDVSVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTPIKRKEQLLEDST
EDLDYGFLSNYKLLNTAITRAQSLVAVVGDPIALCSIGRCRKFWERFIALCHENESLHGI
TFEQIKAQLEALELKKTYVLNPLAPEFIPRALRHQHSANTTKQQQSPPKGKVHHHSQNDH
FPPDGIVQPNPSVLIGNPIRAYTPPPPPLGPHPNLGKSPSPVQRIDPHTGTSILYVPAVY
GGNMVMSVPLPLPWTGYQGRFAVDPRIITHQAAMAYNMNLLQAHGRGSPIPYGLGHHSPV
SIGQQQQLQHQDKEQHEQSRNGKSENTAGPEISKIRTPEKKPLESKQVDLEANSQNRSPE
SRSTVGYPNAKFHRKDNLNPRQLNLHLTPPHSQYAVPNRHFQHLSQIPRQPYPLQQQQNL
LSQQQNHLPEQQNQMPPQQSQVVQQHNHLNQQPPQPSQLSPAYQAGPSQSFFNNPIPHRP
HSPAVDAVISEQHPPPMLQEVSNPLRPIAQHNPVLPTHLNNFIEENPPGMPLGDTLDRMH
GNVALETIRQQQQARLQQWNEHNAYLSQGTIPYQHHHHPHLPHLPQQPIGLHQQQQVRAN
WKLASNTEDETEATYSRFQDLLRELSHRDQSESRDLAEMPPPQSRLLQYRQVQPRSPPAL
PSPSCNSNHSGHFPNFTENNRDIEIPSNPAFQQHLPQIYNPSFSMPSEHITPSPLKYLQP
DGSWTYANLQQNHLIGQGFHYGIPPLPHRSQQNPFIQIQNHQHAVGQEPFHPLASRAVSA
SSLHSLEEYEPRGPGRPLYQRRISSSSVQACSEELSTPQDSLGQCKELQDHSNQSSFNYS
SPELWVNSSSSAPYPNIPCNGANRAVPPRELLAPPKTVKPPEEHLKAENIQLSNSFNYSV
LQHLGQFPPLMPNKQIVESNSNSQQNAGGSKPVMSYASALRAPPKPKPPPEQTKKNSDPL
SLFQELSLGSSSGSNGFYSYFK
NT seq
5829 nt
NT seq
+upstream
nt +downstream
nt
atggcagacagaagaccagagaagtcatgtgaacaagcatgtgaatctcttaagcagcag
gattatgaagtggcagtgaagcattgcacagaggctctcctttccctcagccagtacccc
ccagctcacctcccggaggcatgccaggcagaaatcgaccgcatcaaaatcgagactctt
ctgtatagaattgcttcctttttacaacttaaaaagtatgggcaagcagatgaagactgt
aggcatgtgctgggagaggggctggccaagggagatggatctttccgtgcagtgctctgc
tgcatgcatcttaaagggaagctgcaaattgtgtctaatgttctttccaagtcactgatg
ggtgaatcactgaacgggatggtaactaaagatctgacacgactgaaaacacttcttgct
gaaacagaggcagctggtaaagtaccatcaggatatcatgtagaagatttagaagaaggg
tcccgggatggctggcagttccgccctccacctaggggagtcacaagcagtgaagaatat
acgctatgtaaaagatttttagagcaagggatctgcaggtacggtgcacagtgtacttca
gcacattcccaggaagagctaacagaatggcaaaaacgatatgcttcccgcttgatcaga
ttaaaacagcagaaggaaaacaaacaatgttcgggcagttatatggaaaccttgattgag
aaatggatgaattcgttatctcctgagaaagtgcttagtgaatgtgtagaaggagtgaga
gtagaacataatcctgagctatcggtaactgtcaccaccaaaaagtctcatcagacatgg
acattcgctctcacttgtaagcctgcaagaatgctgtatcgagtggcattgctttatgat
gcccatcgtccacattttagtatcgttgcaatatctgctggagacagcactacccaggta
tcacaagaagttccagaaaactgtcaggaatggataggagggacgatggtccagaacggc
atagaccattatatatacaaagtcagtatagcctttaacacagaaatctttggaactttt
cgccaaactgttgtgtttgactttggattagaaccagtcctcatgcaacgagtaatgatt
gatgctgcttcaactgaagatcttgaatatctgatgcatgcacggcaacagctactaacc
acagctaagcgttgggattctacttctaagactattgtagaatttgagcctaatgaaact
actgaattggagaagagccttcttaccagataccaaatccctctgtctgctgaccagcta
tttacacaatctgtcctggacaaatcattgaccaagaccaactatcagtcgcggctacat
gacctcctttatattgaggaaatagcacagtataaggaagttagcaagttcaacataaaa
gtgcaattgcagattgtagcaagcttcatgctcactggtgtttctggaggtgcaaagtat
gcccaaaatggacaactttttggccgctttaagctcactgaaacgctttcagaagacact
ttggctggacggctggtgatgaccaaagtcaatgctgtttatttattgcctgtcactaaa
gagaagtcagcacagacccaaggaaccaaagagaaggtttatgaagcagctattgaggag
aaaacaaaggattatatcttcttgagggtatccagggaatgctgcgaagaacttaatctt
cgggcagattgtgaaatgcaggttgaacttcagtttcagttaaatcgcttacccctttgt
gaaatgcattatgccttggacaggattaaggacaacagtattttgtttccagatgtcagc
atgactcccaccataccctggagtcccaacagacaatgggatgagcagttggaccctcga
ctaaatgcgaagcagaaagaggctgttctggctatcactactccactttcaatacaactg
cctcctgttcttatcatcggtccctatgggacaggaaaaacgttcactctggctcaggca
gtcaagcacatactccaacaacaggatactagcaggattctcatttgcacccattctaat
agtgctgctgatctctacataaaggattatttacatccatatgtagaagcaggcaatccc
caggcaagacctctcagggtatatttcagaaatcgctgggtaaagactgtccacccagtt
gtgcatcagtactgtttgatttcaagcacgcattccacctttcagatgccacagaaagaa
gacattcttaagcaacgagtagtagttgttactttaaatacatcacagtatctatgtcaa
ctggatcttgaaccagggttttttacacacattttattagatgaagctgcgcaagctatg
gagtgcgaaactattatgcctctagcattagctaataaaaacacaagaattgtcttggct
ggagatcatatgcagctcagtccttttgtctacagtgaatttgccagggaaagaaacctt
catgtttcattgcttgatcggctctatgagcactaccctgcagaatttccatgcaggatc
ttgctgtgtgagaactatcgctcccatgaagctatcatcaattatacatccgaacttttc
tatgaaggcaaattgatggcaagtggaaagcagccagcacacaaagatttctaccctttg
actttctttacagcacgtggagaagatgtgcaagaaaaaaatagtacagctttttacaat
aatgcagaggtatttgaagtagtagagcgtgttgaagaattaagaagaaaatggcctgtt
gcctggggcaaattggatgacggcagtataggtgtcgtaacaccttatgctgatcaagtg
ttcagaattcgggctgaacttcggaaaaaaagactgtcagatgtcagtgtagagagagtg
ctaaatgttcagggaaaacagtttagagttttgtttctcagcacagtacgaacacggcat
acatgcaaacataagcaaacaccaattaaaaggaaagagcagttactggaggattcaaca
gaagacttggattatggttttctgtctaattacaaacttctcaacactgccattacaaga
gcacaatccttggtagctgtggtgggagatcctattgctttatgttccattggaagatgc
aggaaattttgggaaaggtttattgccctatgtcatgagaatgaaagtctccacggtatc
acatttgaacagatcaaagctcagttggaagctttggagttaaagaaaacttatgtgttg
aacccactggctcctgagtttatccctcgagctcttcggcatcagcattcagcgaatacc
accaaacaacagcagtcaccaccaaagggcaaggtccatcatcatagccagaatgaccat
ttcccacctgatggaattgttcagcccaatccttctgttctaattggaaatcctatccga
gcatatactcctccccctcctcctctgggacctcaccccaatctggggaaatctccaagt
cctgttcaaaggatagatccacacactgggacaagtattctatatgtacctgctgtctat
ggaggaaatatggtcatgtctgtgcctttacctctaccatggacggggtatcagggtagg
tttgcagttgaccctcgaatcattactcatcaagcagctatggcatataatatgaacctg
ttacaggcacatgggcgtgggtctcctataccttatggcctgggacatcattcaccagtt
agcataggacaacagcagcagcttcagcatcaagacaaggagcaacatgaacaaagtcga
aatggtaaaagtgaaaacactgctggacctgaaatcagtaaaattcgaacacctgagaag
aaacctctggaatccaagcaggttgacttagaagcaaattctcagaatagaagcccagag
tcacgttccactgttggttatcctaatgctaaatttcatcgcaaagataatcttaacccc
aggcagctgaatctacatctcaccccaccccactcacagtatgcagttcccaatcgccac
ttccagcacctgtcacagataccaaggcagccatatcctctgcaacagcagcaaaacctt
ttaagtcaacagcaaaatcatttgcctgaacaacaaaaccaaatgccaccccagcaaagc
caggtagttcagcagcataatcatttgaatcagcagcctccacaaccttcgcagctatcc
cctgcttaccaggcaggtcccagccaatctttttttaataatccaattccccaccgacca
cattctcctgctgtagatgctgtgatttcagaacaacaccccccacctatgttacaagaa
gtcagtaatcctttgaggcctattgcacagcacaaccctgttctgccaacccacttgaac
aacttcattgaagagaatccaccaggaatgcccttaggggacactttagatcgtatgcat
ggaaatgtagctttggaaacaataaggcagcaacaacaagccaggttacagcaatggaat
gaacataatgcctatctcagtcaaggcactattccatatcaacaccatcaccatcctcat
ctaccacatcttcctcagcaaccaattggattgcatcaacagcagcaagttagggcaaac
tggaaacttgccagtaatacagaagatgaaacagaggcaacatattcaagattccaggat
ttgctcagagaactgtcacaccgtgatcaaagtgaaagccgggacttagctgaaatgcca
ccccctcagtcaagactgttgcaatacagacaagttcagcccagaagcccaccagcactc
ccttctccttcctgcaactccaaccacagtggtcacttccctaacttcactgaaaacaac
agagacattgaaatacccagtaacccagcatttcagcagcatttaccccaaatatacaat
ccctctttctcaatgccatctgaacatataaccccatctcccttgaaatatctgcaacct
gatggatcgtggacttacgctaacctacagcagaatcaccttatagggcagggctttcat
tatggtatacctccattgccccataggtcacaacaaaacccttttatacaaatacagaat
catcagcatgcagtcggtcaggagccatttcatccactcgcatctcgagcagtatctgct
tcttcgctccacagcttagaagagtatgaaccaagaggaccaggcaggccgttgtaccaa
agaagaatttcctctagttcagtccaggcttgttctgaagaattaagcactcctcaagat
agtcttggtcagtgtaaagagcttcaggaccacagtaaccagtcatctttcaactattca
tcacctgagttgtgggtaaactcctcctcatctgccccatacccaaacattccatgcaac
ggagccaacagagcagttccaccccgggagttgttagctccaccgaagacggtcaagccc
ccagaggaacacctgaaggccgagaacatacagctatccaattccttcaactacagcgtg
ctccagcatcttggccagttcccgcctctcatgcccaacaagcagatcgtcgagtcgaac
agcaacagccagcagaacgctggtgggagcaagcccgtcatgtcctacgcaagtgctctg
cgggctccaccaaagcccaaacctcctcctgagcagacaaaaaagaatagcgaccctttg
tctttgtttcaggaacttagcctaggtagttcatcaggtagcaatggcttttactcctat
tttaaataa
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integrated database retrieval system
