KEGG   Gymnogyps californianus (California condor): 127024515
Entry
127024515         CDS       T08687                                 
Name
(RefSeq) DNA ligase 3
  KO
K10776  DNA ligase 3 [EC:6.5.1.1]
Organism
gcl  Gymnogyps californianus (California condor)
Pathway
gcl03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:gcl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    127024515
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:gcl03400]
    127024515
Enzymes [BR:gcl01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     127024515
DNA repair and recombination proteins [BR:gcl03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Short Patch-BER factors
     127024515
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N LIG3_BRCT zf-PARP DNA_ligase_A_C BRCT_2 RNA_ligase Synaptonemal_3
Other DBs
NCBI-GeneID: 127024515
NCBI-ProteinID: XP_050765064
LinkDB
Position
20:complement(5662788..5678163)
AA seq 994 aa
MPTGSRTLSQAARALGRGTGLFSPHTQVSLSRSCLCCVGLPGASPSYWYQLLLRRVSLQS
TGRNQSGGAGAFHFSLLLNTWLRQACTAAEDMAEQRYCVDYAKRGTAGCKKCKEKIVKGM
VRIGKIVPNPFTESGGDMKEWYHVKCIFEKLEKARATTKKIEDITDLEGWEELQDGEKEL
INKHISEANSKAASTPKKKVIVQAKLTATGQLTTKDPLALITPSPKKFSGFTAKPKNSED
VSANSSHKSSLSAKKCDPKHKDCLLREFRKLCAMVAEKPSYNVKTQIIQDFLKKGSGGDG
FHGDVYLTIKLLLPGVIKIVYNLNDKQIVKLFSRIFNCSQEEMVRDLEQGDVSETIRLFF
EQSKSCPPAAKSLLTIQEVDEFLIQLSKLTKEDDQQSVLQHITRRCTGNDLKCIIRLIKH
DLKMNAGAKHVLDALDPNAYEAFKASRNLQDVVERVLKNQQEAEKMPGLKRTLSVQASLM
TPVQPMLAEACKSIEYAMKKCPNGMYAEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKV
AHFKDFIPQAFPGAQSMILDSEVLLIDNKTGKPLPFGTLGVHKKAAFQDANVCLFVFDCI
YFNDMSLMDRPLCERRKFLHDNMVEIPNRILFSEMKHVTKASDLADMITRVIREGLEGLV
LKDIKGNYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDP
KSEKWCTVTKCSGGHDDATLARLQTELDMVKISKDPSKIPRWLKINKIYYPDFIVPDPKK
APVWEITGAEFSKAEAHTADGISIRFPRCTRIRDDKDWKTATNLQQLKELYQLSKEKADF
SVVAGEEDESTAGSSGENEGNSRSSTPHSAIKTPPSKSPAKAQKPEESKAVVGSPQKSEE
KRGEKRKASEMDDNGKKTLLDIFTGVKLYLSPSVKDFDKIRRYFIAYDGDLVPEFDTASA
THVIGDIDENPGAKRVSPNWIWACIRKRRLVAPC
NT seq 2985 nt   +upstreamnt  +downstreamnt
atgcccacaggcagcaggacactatcacaggctgcccgggcactcggcaggggcacagga
cttttctccccccatacacaggtctccttgtcaagatcctgcctttgctgtgttggcctc
cctggggccagccccagttactggtaccagctgctgttacggcgtgtatctctccagtcc
acaggcagaaaccagagtggtggtgctggggctttccatttctccctgcttttgaacact
tggcttcgccaagcctgcacagcggcagaggacatggcagagcagaggtactgcgtagac
tatgctaagcgtggcacagcaggctgcaagaagtgcaaggagaagatcgtgaaaggaatg
gtgcgcattggaaagattgttcccaatcctttcacggagtctggcggggacatgaaggag
tggtaccatgtgaagtgcatctttgagaagctggagaaggcccgggccaccaccaagaaa
atcgaagacatcacagacttggaaggatgggaagagctacaagacggggagaaagaatta
atcaacaagcacatctcagaagctaattccaaggctgcaagtacaccgaagaaaaaagtg
atagtccaagctaagctcactgccacaggacaactaactacaaaagatccattagctctt
atcactccatcaccaaagaagttctctggcttcacagccaagccaaagaattcagaagat
gtctctgcaaactcttcccacaagtctagcctatctgcaaaaaaatgtgatccgaagcac
aaagactgcttgctgcgagagttcaggaagctctgtgccatggttgctgaaaagcctagc
tataatgtgaaaacacagatcatccaggattttctgaagaagggatctggaggagatggt
tttcatggtgacgtatacctgaccattaagctgctgttaccaggcgtcattaaaattgtt
tacaacttgaatgacaagcagattgtaaagctgtttagtaggatttttaactgcagccaa
gaagaaatggtccgggacctggaacagggagatgtttccgagaccatacgcctcttcttt
gaacagagcaagtcttgtcctccagcagccaaaagtctcctgaccatccaagaggtagat
gagttcctaatccagctatcaaagcttactaaggaagatgaccagcaaagtgtgctgcaa
catatcactcgcaggtgtacaggcaacgacctgaaatgcatcatcaggctaattaagcat
gacttgaaaatgaatgctggagcaaagcatgtgttggatgctttggatcccaacgcttac
gaggcgttcaaagcatcacgcaacctccaggatgtggtggagcgagtcctgaagaaccag
caagaggctgagaagatgccaggtctgaagcgaaccctcagtgtgcaggcctctctgatg
accccggtgcagcccatgctggctgaagcttgcaagtcaattgagtatgccatgaagaag
tgcccaaatggcatgtatgcagagatcaaatatgatggcgagcgggtgcaggtccataaa
aatggagatcatttcagctacttcagcagaagcctcaaacctgtcctcccacataaagta
gcccattttaaggacttcatcccccaggctttccctggtgcgcaaagtatgatcctggat
tcagaagttcttctgattgacaacaaaactggcaagccacttccttttgggactcttggt
gtgcacaagaaagctgctttccaagatgccaacgtttgcttgtttgtgtttgactgcatc
tatttcaatgacatgagcctgatggacaggcctctgtgtgaacgtcgtaagtttctccac
gataacatggttgaaatccccaatcggatcctcttctcggagatgaagcatgtgacaaaa
gcttcagatctggcagatatgatcacccgagtcatccgtgagggactggaaggactggtg
ttgaaagatataaagggtaactatgaaccaggaaaacgacactggctgaaagtgaaaaag
gactacctaaatgagggtgcaatggctgacacagcagacctggtggtgctgggagctttc
tatggacaaggcagtaaaggtgggatgatgtccatcttcctcatgggctgctatgacccc
aagagcgagaagtggtgcactgtgaccaagtgttctggtggccatgatgatgccaccttg
gcgcgtctgcaaacagagctggatatggtgaagatcagcaaggatcccagtaaaattcca
aggtggctaaaaattaacaaaatctactacccagacttcattgtcccagatccaaagaaa
gccccagtgtgggagatcacaggggctgaattctctaaagctgaagcccacactgcagat
gggatctccattcgcttccctcgctgcacccgcattcgagatgacaaagactggaagaca
gccaccaacctccagcagcttaaggagttgtaccagctctccaaagagaaggctgatttc
agtgttgttgctggggaggaagatgagtccacggctggcagcagtggagagaatgaggga
aattccaggtcttccacaccacacagcgctattaaaactcccccaagcaagtcacctgca
aaagcccagaagccagaagaaagcaaagcagtcgttggatcgcctcaaaaatcagaggag
aaacgaggtgagaagcggaaagcatccgagatggatgacaatggaaaaaagacactgctg
gacatattcaccggtgtgaagctgtacctgtcgccctctgtgaaggacttcgacaaaatc
cggcggtactttatagcatatgatggggatctcgtgccagagtttgacacagcctcagcg
acgcatgttataggggacattgatgagaatcctggtgctaagcgtgtgtctcccaactgg
atctgggcatgcatccggaagcggagactggtagccccatgctag

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