Gymnogyps californianus (California condor): 127024988
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Entry
127024988 CDS
T08687
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-2(IX) chain
KO
K08131
collagen type IX alpha
Organism
gcl
Gymnogyps californianus (California condor)
Pathway
gcl04510
Focal adhesion
gcl04512
ECM-receptor interaction
gcl04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gcl00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
127024988
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
127024988
09142 Cell motility
04820 Cytoskeleton in muscle cells
127024988
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
gcl00535
]
127024988
Proteoglycans [BR:
gcl00535
]
Extracellular matrix (ECM) proteoglycans
Others
127024988
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
127024988
NCBI-ProteinID:
XP_050765697
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All DBs
Position
22:5855390..5869339
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AA seq
691 aa
AA seq
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MAGCSPVLHLWLLLQAACLCLAQIRGPPGEPGPRGPPGPPGVPGVDGIDGDKGSAGVPGS
PGAKGEPGAPGPDGPPGKPGIDGLTGAKGEPGPIGGPGLKGQPGLPGPPGLPGPSLPGPP
GLPGQVGLPGEIGALGPKGDPGPDGPRGPPGPPGKPGPPGHIQGLEGSADFLCPTSCPPG
PKGPQGLQGLKGHRGRPGALGEPGRQGRQGPKGDVGISGEQGVPGPPGPQGLRGYPGMAG
PKGETGPAGYKGMVGTIGAAGRPGREGPKGPPGDAGEKGDLGGRGIRGPQGDIGPKGENG
LPGIDGKDGTPGIPGVKGGVGQAGRPGTPGHRGQAGLPGQPGSKGGPGDKGEVGARGQPG
VTGAPGRSXGEPGPRGEQGPQGVPGMKGDRGERGLVGPPGEQGKAGPKGEQGPPGIPGPQ
GLPGVKGDKGSPGKTGPKGGTGDPGVHGLAGLKGEKGESGEPGPKGQQGIQGELGFPGPS
GDAGAPGVQGYPGPPGPRGLVGERGVPGMPGQRGVAGRDAGDQHIVDVVLKMLQEQLAEV
AVSAKRAALGGVGAMGPPGPPGPPGPPGEQGPHGPMGPRGVPGILGAAGQIGNIGPKGKR
GEKGERGEAGRGHPGMPGPPGIPGLPGIPGHALDGKAGERGLPGSPGEAGRPGLPGPAGL
PGFCEPAACLGASAYAAARLTEPGAVKGPVY
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggccggctgctcccccgttctccacctctggctcttgctccaagctgcctgcctctgc
ctggcccagattcgagggccgccgggagagcccggcccgcgaggaccccccggtccccca
ggagtgccgggagtggatggcattgacggtgacaaaggctctgctggagtccccgggtcg
ccgggtgccaagggggagcctggagcccctggtccagacgggcccccagggaagccaggc
atcgacggcttgacaggagcgaaaggggagccagggcccatcggcgggccaggacttaag
ggccagcctggactcccagggccaccggggctccctggtccttcgctgccaggaccaccc
gggcttccaggccaggttgggcttcccggagagatcggagcgctgggacccaagggtgac
cctggacccgatggcccgcggggtcccccaggccctccagggaaacctggccccccagga
cacatccaaggactggaaggcagcgctgatttcttgtgcccgaccagctgcccaccaggt
cccaagggcccccagggactgcagggactgaagggacacagaggccgccccggcgccctc
ggggagcccggcaggcagggcaggcagggccctaagggtgacgttggcatctctggagaa
caaggtgtcccaggccctccgggaccgcagggcctgaggggttaccccgggatggcagga
cccaagggtgagacgggtcctgctggttacaaggggatggtcgggaccatcggagcggcc
gggcggccgggcagggaaggccccaagggaccacctggggacgccggtgagaagggagat
ctgggtggccgtggcatcaggggcccccaaggagacatcggccccaagggggagaatggt
ctcccgggcatcgatggtaaagatggcaccccgggtatcccaggcgtgaagggtggtgtg
ggacaggccggccgcccagggacaccgggacaccggggacaagctggcttgccaggccag
ccgggaagcaaaggtggcccaggagacaagggtgaagtgggtgctcggggccagcccggt
gtcaccggtgccccgggcagatcgtaaggtgagcctggacctcggggtgagcagggaccg
cagggtgtccccgggatgaagggcgaccggggcgagcgtggcctcgtgggcccccccggc
gagcaggggaaagcggggccaaagggcgagcagggtccaccagggatcccaggaccccaa
ggcttgccgggagtcaaaggagacaagggctccccagggaaaactggccccaaaggcggt
actggagaccccggcgttcatggcctcgcggggctgaagggagagaagggtgaatcgggt
gagccagggccaaagggacagcaaggcatccagggcgagctcggcttccccggcccctcg
ggggatgcaggcgcacccggcgtgcaaggctacccgggaccccctggcccacgaggactc
gtcggggagcgcggcgtgccagggatgcccggccagcggggcgtagcgggccgggacgct
ggggaccagcacatcgttgacgtggtcctgaagatgctgcaagagcagctggcggaggtg
gcggtcagcgccaagagagctgccctgggtggagtcggtgccatgggaccccccggaccc
cccggtcccccagggccacccggtgagcagggcccgcacggacccatgggacctcgaggt
gtccctggcatcctgggtgctgccgggcagatcggcaacataggacctaaagggaagcga
ggcgagaagggtgagcggggagaagctggccgcggccacccgggcatgccgggtcccccg
gggatcccaggtctccctggtatccccggccacgcgctcgacggcaaggccggagaaagg
ggcttgccgggctccccgggagaggctggccggccgggcttgcccggtcccgctggcctg
ccaggattttgtgagccggccgcctgcctgggagcctcggcgtacgccgccgcacgcctg
acggagccaggggccgtcaagggacctgtctactga
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