KEGG   Gymnogyps californianus (California condor): 127025058
Entry
127025058         CDS       T08687                                 
Name
(RefSeq) histone deacetylase 1
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
gcl  Gymnogyps californianus (California condor)
Pathway
gcl03082  ATP-dependent chromatin remodeling
gcl03083  Polycomb repressive complex
gcl04110  Cell cycle
gcl04330  Notch signaling pathway
gcl04350  TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:gcl00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    127025058
   03083 Polycomb repressive complex
    127025058
 09130 Environmental Information Processing
  09132 Signal transduction
   04330 Notch signaling pathway
    127025058
   04350 TGF-beta signaling pathway
    127025058
 09140 Cellular Processes
  09143 Cell growth and death
   04110 Cell cycle
    127025058
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:gcl03036]
    127025058
Enzymes [BR:gcl01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     127025058
Chromosome and associated proteins [BR:gcl03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     127025058
   HDAC complexes
    Sin3A-HDAC complex
     127025058
    BRAF-HDAC complex
     127025058
    REST complex
     127025058
    SHIP complex
     127025058
    MiDAC complex
     127025058
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     127025058
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    127025058
  Chromatin remodeling factors
   NuRD complex
    127025058
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 127025058
NCBI-ProteinID: XP_050765809
LinkDB
Position
22:5551708..5567817
AA seq 480 aa
MALTQGTKRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKAN
AEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSAGGSVAS
AVKLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHG
DGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAI
FKPVISKVMETFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHAKCVEFVKSFNLPMLMLGG
GGYTIRNVARCWTYETAVALDTEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLE
KIKQRLFENLRMLPHAPGVQMQPIPEDAVQEDSGDEEEEDPEKRISIRNSDKRISCDEEF
SDSEDEGEGGRKNVANFKKAKRVKTEEEKEEEEKKDEKEEEKAKEEKAEPKGVKEETKST
NT seq 1443 nt   +upstreamnt  +downstreamnt
atggcgctgacgcaggggaccaagcggaaagtctgctactactacgacggtgatgttgga
aactactattatggccaaggacatccaatgaaaccccacaggatccggatgacccacaac
ctactgctgaactatggcctctacaggaagatggagatatatcgccctcacaaggcaaat
gcagaagaaatgaccaagtaccacagtgatgactacataaaatttctgagatctattcgc
ccagataacatgtctgagtacagcaagcagatgcaaagatttaatgttggggaagactgc
cctgtgtttgatgggttatttgagttctgtcagctctctgctggaggctcagttgccagt
gctgtgaagctgaacaagcaacagacagatattgctgtgaactgggcgggaggccttcac
cacgctaagaagtcagaggcttctggcttctgttatgtcaacgatatcgtcttagctatc
ttggagctcctaaagtatcaccagagagtgctgtatattgacattgatattcaccatgga
gatggcgtggaggaagccttttataccacagaccgtgtcatgaccgtgtcctttcataag
tatggagaatacttcccaggaacaggggacctacgggatattggtgcaggcaaaggcaag
tactacgctgtcaactatcccctccgggacggaattgatgatgagtcctatgaagcaata
ttcaagccagtgatatctaaagtgatggagacgttccagcctagcgcagttgtcttgcag
tgtgggtcagattctctgtcaggggacaggctgggttgtttcaatctgaccatcaaaggt
catgccaagtgtgtggagtttgtaaaaagttttaatttgcctatgctgatgctgggagga
ggtggctatacgatccgcaacgtggctagatgctggacctatgagactgctgtggctttg
gacactgaaattcccaatgaacttccatataacgactattttgagtactttggaccagac
tttaagctccacatcagtccttcgaacatgactaaccagaataccaatgagtatctcgag
aagatcaagcaacgtctctttgagaatctgcgcatgctgcctcatgcccctggcgtccag
atgcagccaattcctgaagatgctgttcaggaagacagtggagatgaagaggaggaagat
cctgagaaacgcatttcaatccgcaattctgataagagaatatcctgtgatgaagaattc
tctgactcggaagatgaaggggaaggagggcgcaaaaatgttgccaactttaagaaagct
aagcgtgtgaaaacagaagaggaaaaggaggaagaggagaagaaagatgagaaagaagag
gaaaaagcaaaagaggagaaagcagaacccaaaggggtgaaggaagagacgaaatccacc
taa

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