Gymnogyps californianus (California condor): 127025799
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Entry
127025799 CDS
T08687
Name
(RefSeq) probable ATP-dependent RNA helicase DDX6 isoform X1
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
gcl
Gymnogyps californianus (California condor)
Pathway
gcl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gcl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127025799
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gcl03019
]
127025799
03036 Chromosome and associated proteins [BR:
gcl03036
]
127025799
Enzymes [BR:
gcl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
127025799
Messenger RNA biogenesis [BR:
gcl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
127025799
mRNA degradation factors
5'-3' decay
Decapping complex
127025799
Chromosome and associated proteins [BR:
gcl03036
]
Eukaryotic type
Gene silencing
piRNA pathway
127025799
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
127025799
NCBI-ProteinID:
XP_050766869
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All DBs
Position
25:complement(95163..107444)
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AA seq
483 aa
AA seq
DB search
MSTARTENPVIMGLSSQNGQLRGPVKPSGGPGGGGTQTQQQMNQLKNANTINNGTQQQAQ
SMTTAIKPGDDWKKTLKLPPKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPS
PIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQV
SQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVEHV
QMIVLDEANKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINL
MEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYS
CFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLH
RIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSNIDKSLYVAEYHSEPVED
EKQ
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgagcacggccagaacagagaaccctgttataatgggtctatccagtcagaatgggcag
ttgagaggccctgtaaaacccagcgggggcccaggaggtggaggcacacaaactcagcaa
cagatgaaccagctgaaaaacgccaacacaatcaataacggcactcaacagcaagcacag
agtatgaccaccgctattaaacctggtgatgactggaagaagactttaaaactccctcca
aaggatttgagaatcaaaacttcggacgtgacctccacaaaaggaaacgagtttgaagat
tactgtttgaaacgggagttgctgatgggaatttttgaaatgggctgggaaaaaccatct
cctattcaggaggagagcatccccattgctttatctggtagggatatcttggctagagcg
aaaaatggaacaggcaagagtggagcctacctcattcctttacttgaacggctagactta
aagaaggacaatatacaagcaatggtgatcgttcccacccgtgaactagccctgcaggtc
agtcaaatctgtatccaagtcagcaaacacatgggaggtgccaaagtgatggcaacaacg
ggaggaaccaatttgcgcgatgacataatgaggcttgacgatacagtgcatgtggtgata
gctacccctgggagaattctcgatctcatcaagaaaggagtagcaaaagttgagcatgtc
cagatgatagtattggatgaggcaaataaattgctgtctcaagattttgttcaaataatg
gaagacattattctcacgctacctaaaaacagacagattttgctctactcagccactttc
cctttgagtgtacagaagttcatgaattcccatttgcagaaaccctacgagattaatctg
atggaggagctgaccttgaagggagttacccagtactatgcctatgtaactgagcgtcag
aaagtacactgcctcaatacgctgttttccaggctccagattaaccagtcgatcattttc
tgcaactcctctcaacgggttgaattgctagccaaaaagatctcccagttgggctattcc
tgcttctatatccatgctaaaatgaggcaggagcaccgcaatcgtgtattccacgatttc
cgaaatggcttatgccgcaatcttgtttgcactgatctgtttacccgaggtattgatatc
caagctgtgaatgtggtgataaactttgatttcccaaagctggcagagacttatctccat
cgtattggcagatcaggtcgctttggtcatcttggcctggccatcaacttgatcacctat
gatgatcgattcaacctgaaaagtattgaggagcagttgggaactgaaattaaacccata
ccgagcaacattgacaagagcctgtatgtggcagaataccacagtgaacctgtagaagat
gagaaacagtaa
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