Gymnogyps californianus (California condor): 127027195
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Entry
127027195 CDS
T08687
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
gcl
Gymnogyps californianus (California condor)
Pathway
gcl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gcl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127027195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gcl03019
]
127027195
03041 Spliceosome [BR:
gcl03041
]
127027195
03009 Ribosome biogenesis [BR:
gcl03009
]
127027195
03016 Transfer RNA biogenesis [BR:
gcl03016
]
127027195
Enzymes [BR:
gcl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
127027195
Messenger RNA biogenesis [BR:
gcl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
127027195
Spliceosome [BR:
gcl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
127027195
Complex C
U4/U6.U5 tri-SnRNP related factors
127027195
Ribosome biogenesis [BR:
gcl03009
]
Eukaryotic type
Pre-60S particles
Helicases
127027195
Transfer RNA biogenesis [BR:
gcl03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
127027195
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
127027195
NCBI-ProteinID:
XP_050768736
LinkDB
All DBs
Position
Z:complement(65233507..65280981)
Genome browser
AA seq
1034 aa
AA seq
DB search
MADAFGDELFSVFEEDSAATASGAKKSKVGATESARRPGKRSEEKSSVAATGRPKREVEV
DSTEDATLGKKPKLEDVVSEDANLADLMPQVKVQAVETVEGCTHEVALPADEDFTGLKPR
TGKAAKEYPFILDAFQREAILCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFT
SPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAW
VIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIY
TDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKGGT
KGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNAI
DCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMG
INMPARTVLFTSASKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIG
KQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRTIPEIVERVNNL
EGQYNKIAIPNEESVVIYYKIRQQLAKLGKEIEEYVHKPKYCLPFLQPGRLVKVKNEGDD
FGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLHCSKESLKNSATEAAKPARPDEKGEMQV
VPVLVHLLSAISSVRLYIPKDLRPIDNRQSVLKSIQEVQKRFPDGVPLLDPIDDMGIKDQ
GLKKVIQKVEAFEHRMYSHPLHNDPNLETVYKLCEKKAQIAMDIKAAKRELKKARTVLQM
DELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQATAL
LSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEENYLNSFRPNLMD
VVYTWANGANFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGIT
KIKRDIVFAASLYL
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcatttggcgatgagctcttcagcgtgtttgaggaggactcggccgcgacc
gcctccggcgccaagaagagcaaagtgggcgccaccgagagcgccaggagaccgggaaaa
cggtcggaggaaaaatcttcagtagctgcgacagggaggcccaaaagggaagttgaggtc
gatagtacagaagatgccactttgggaaagaagccaaaattggaagatgttgtatcagaa
gatgctaatctggcagacctgatgcctcaagtaaaggtgcaagctgtggaaactgttgaa
ggttgtacacatgaggttgcacttccagcagatgaagacttcacaggtctgaagccaaga
actggaaaagctgcaaaagaatatccatttattcttgatgcctttcagagagaagctatt
ctttgtgtagataataaccagtctgtgttagtgtcggctcatacatcagctggtaaaact
gtttgtgcagagtacgcaattgccctggctttgagggagaaacagcgtgtgatatttaca
agtccaattaaagctttgagtaatcaaaagtaccgtgagatgtatgaagaatttcaggat
gttggtttgatgactggggatgtcaccattaatcctacagcttcttgtctggtaatgaca
accgagattttgagaagtatgctctacagaggttctgaggttatgcgagaagtcgcatgg
gttatttttgatgaaatccactacatgagagattcagaacgtggtgtggtttgggaagag
acaattattttgctccctgacaatgttcattatgtgttcctttctgcaactattccaaat
gcccgtcagtttgctgaatggatctgccatcttcacaaacagccttgccatgtgatttac
accgactatcgacccactccactgcagcattatatattcccagcaggaggagatggactc
catctggtagttgatgaaaatggagatttcagagaagataattttaatacagcaatgcaa
gtgcttagagatgcaggagacttagcaaaaggggaccagaaaggcaggaaaggaggaacg
aaaggtccttcaaatgtttttaagattgtgaagatgatcatggaaaggaatttccaacct
gtgattattttcagcttcagtaagaaagactgcgaagcctatgcgcttcagatgacaaag
ttagatttcaatacagatgaagaaaaaaagatggttgaagaagtgttcaataatgcaatt
gattgtctgtcagatgaagacaaaaagcttcctcaggttgagcatgtacttcctcttctg
aagcgaggaattggtatccatcatggtggcctgcttcctatcttaaaagaaaccatagaa
attcttttctctgagggcctaataaaggccttatttgcaacggagacttttgctatggga
attaatatgccagccaggactgtgctatttacgagtgccagcaaatttgatggaaaagat
ttccgatggatatcctcaggtgaatacattcaaatgtcaggtcgtgcaggacgccgaggt
atggatgacagaggaatagtaattcttatggtggatgaaaaaatgagtccaacaattggc
aagcagcttttgaagggttcagctgatcctttaaacagtgcattccacctgacgtacaac
atggtattgaacttgcttcgagtagaggaaattaaccctgaatacatgttagaaaaatcc
ttctatcaattccaacattacagaactattccagaaatagtagaaagagtgaataatttg
gaaggacagtacaacaaaatagcaattcccaatgaagaaagtgtggtcatatactacaaa
atccgacagcagcttgcaaaactgggtaaagagattgaagaatatgttcacaaaccaaag
tattgcttgccctttctacagccaggaagactggtaaaggtgaagaatgaaggtgatgac
tttggatggggagtggttgttaatttctctaagaaatcgaatgttaagccaaattctggt
gaattggacccattatatgtagttgaagtgctactgcactgcagcaaagagagtttgaaa
aattctgctactgaggctgcaaagccagccagacctgatgagaaaggagagatgcaggtt
gttcctgttttggtacatcttctctcagctatcagcagtgtccgactttacataccgaaa
gacctgaggcctattgacaacaggcaaagtgtgttaaaatctatacaagaagtacagaag
cgatttcctgatggagtaccattactagaccctattgatgacatgggcatcaaagatcaa
ggactgaaaaaagtaatccaaaaagtagaggcatttgagcataggatgtattcacatcct
cttcacaatgatcccaacttggaaaccgtatacaaactttgtgaaaaaaaagcacagatt
gctatggatattaaggcagcaaagcgagaattgaaaaaagccagaactgtcttacaaatg
gatgaactcaaatgccgcaagcgtgttttgagaagactggggtttgccacatcttcagat
gttattgagatgaaaggacgggttgcttgtgaaatcagcagtgctgatgaactactcctg
acagaaatgatgttcaatggtctcttcaatgacttatctgcagaacaggcaactgcacta
ctaagctgttttgtatttcaagagaactccagtgaaatgccaaaattgacagagcagttg
gcaggaccacttcggcaaatgcaggagtgtgcaaaaagaatcgccaaggtgtcggcagaa
gcaaaactggaaattgatgaagaaaattacttaaattctttcagacccaacctaatggat
gttgtgtatacatgggcaaatggagctaactttgctcacatctgcaaaatgactgatgtc
tttgaaggtagcataattcgttgcatgagaaggctagaagaattgcttcggcagatgtgc
caggctgcaaaagccattggaaacacagagttggaaaataagtttgcagaggggattaca
aaaatcaagagggatattgtgtttgctgccagcctttacctgtaa
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