Gymnogyps californianus (California condor): 127029781
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Entry
127029781 CDS
T08687
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
gcl
Gymnogyps californianus (California condor)
Pathway
gcl04382
Cornified envelope formation
gcl04510
Focal adhesion
gcl04512
ECM-receptor interaction
gcl04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gcl00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
127029781
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
127029781
09142 Cell motility
04820 Cytoskeleton in muscle cells
127029781
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
127029781
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
gcl04147
]
127029781
00536 Glycosaminoglycan binding proteins [BR:
gcl00536
]
127029781
Exosome [BR:
gcl04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
127029781
Glycosaminoglycan binding proteins [BR:
gcl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
127029781
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
127029781
NCBI-ProteinID:
XP_050771567
LinkDB
All DBs
Position
1:complement(64904815..65033055)
Genome browser
AA seq
1669 aa
AA seq
DB search
MRLWLGFGLLLSAELSAVSAAGCSGCGKCDCSGVKGQKGERGLPGLQGVIGFPGMQGPEG
PPGPPGLKGDTGEPGLPGTKGTRGPPGASGFPGNPGLPGIPGQDGPPGPPGIPGCNGTKG
ERGPVGPPGLPGLTGSIGPPGPPGMKGDPGEVIGLLPPSVLKGDKGFPGQPGLPGPPGTP
GFQGPMGPQGPPGDPGPPGPPGLPGEKGYMGLGFQGPKGEKGEQGVRGPPGPPGPAPHMK
EKGSEVIRGEKGDPGEKGEQGAPGLPGSGFKGEKGEPGKPGPRGKPGKDGEPGPKGEPGL
PGGFGIPGRPGEPGTKGDKGERGFAGPPGRVIDSGPVDAFGEKGEPGVSGLPGLKGQKGE
KGFPGIQGVPGPPGQPLPDRVGSPGVPGERGEKGEKGSPGFSLPGPPGRDGFPGPPGLPG
PPGPPGKTDGIDQCQQGEPGAPGSPGLPGRDGLPGEMGEKGDKGESCALCDEVGPPGLPG
PQGPPGPAGFPGQSGFKGDRGLPGLDGLPGVPGPPGTPGLMGSPGAKGEPGDFSYDSILK
GEKGDPGFPGQPGTPGREGRPGKDGLPGLQGPKGASGTAGLKGERGPPGQPGFPGVRGER
GFPGPPGIGTAGLPGDKGDRGFAGTPGLPGLPGAKGEAGRTVPLPGPPGADGLPGPPGFP
GPQGDKGNPGLPGRPGLPGEKGAVGQPGIGFPGPPDPKGFQGQPGSPGLPGTPGTPGLDG
LPGIPGLQGQKGEPGVGLPGPKGLPGPPGPSGIPGEKGSPGLPGLRGEQGFPGIPGQQGF
RGDPGLPGLQGXAGPSGTPGLGPQGLPGPAGQPGPQGPPGFPGIKGDRGFPGIPGLDMPG
PKGDKGSQGQPGVPGSVGLPGLPGPQGAVGLKGSAGAKGEMGVMGTPGLPGTPGPVGDRG
LPGEKGSQGFKGVVGPQGDPGVKGDKGEAGLPGKPGTMDTMDMVSLKGQKGDQGEKGDHG
ATGEKGLRGEYGEPGIPGKDGEPGTPGHPGPKGDQGPPGYPGDPGIPGQKGSVGEMGLPG
TPGEKGLPGVPGSPGTPGFPGXKGEKGDKGAPGFPGIGFPGSPGEKGEPGRTGSPGLSGD
KGEKGSAGIPGMPGAPGPKGSPGMAGFPGNPGRHGEKGEKGLPGLSGIPGLKGEPGEPGV
PGPAGSIGQKGEPGYDGIPGAAGAKGEQGIPGRGLPGFPGAKGDKGAKGDVGFPGSPGSP
GIPGLKGEPGYAGPPGPKGSQGLPGLPGSAIAGPKGDRGPQGQPGLPGLPGPTGPPGPPG
LKGAKGEQGSNGWPGIPGGPGVKGDPGFQGPPGGPGLPGDIGQKGDLGPPGVPGVPGPKG
SPGFPGLKGERGDQGLPGSKGLQGPPGPPGAFQLVKGDPGLPGPVGPVGLKGFPGLPGPK
GQQGVTGPSGVPGPPGSPGFDGKPGQKGEVGPYGPPGPRGFPGPPGPEGLPGAMGPPGAP
SVAHGFLVTRHSQTTEEPSCPFGTRLIYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTM
PFLFCNINNVCNFASRNDYSYWLSTPEPMPMNMAPITGDNIRPFISRCSVCEAPAMVIAV
HSQTIQIPPCPEGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRG
TCNYYANAYSFWLATIERNEMFKKPTPSTLKAGDLRSNVSRCQVCMRKT
NT seq
5010 nt
NT seq
+upstream
nt +downstream
nt
atgcggctctggctgggcttcgggctgctgctgagcgcagagctcagcgccgtgtctgcc
gcgggttgttccggttgtggaaaatgtgactgcagtggagtaaaagggcaaaagggagaa
agaggcttgccgggactacaaggtgtgattgggtttcctggaatgcaaggacctgaaggt
ccccctgggccaccagggcttaagggtgatactggagaaccaggactgccaggaacaaag
ggaacaagaggccccccaggagcatcaggctttccaggaaatccaggccttcctggcatt
cctggacaagatggccctcctggtccacctggcattccaggatgtaatggcacaaagggt
gaaagaggtccagtaggtcccccaggtttaccaggactgactgggagcataggaccccca
ggacctcctggaatgaagggagatccaggtgaagtgattggtcttttacctcctagtgtg
ctaaaaggtgataaaggctttcctggccaacctggactacctggtccacctggaactcca
gggtttcagggaccaatggggccacaagggcctccaggagatccaggtcctccagggcca
ccaggactcccaggcgagaagggctacatgggcttgggctttcagggtcccaaaggtgaa
aaaggagaacaaggggtaaggggccccccaggccccccaggaccagcaccacatatgaaa
gaaaaagggagtgaagtcataaggggagaaaagggtgatccaggtgaaaagggtgaacag
ggagccccaggattgccaggttcaggtttcaaaggagaaaagggtgaacctggaaagcct
ggtccacgtggaaagcctggaaaagatggtgaaccaggaccaaaaggagaacccggtttg
cctggtgggtttgggattccaggacgacccggggagcctggtacgaagggtgacaaaggt
gaacgaggttttgcaggacctccaggaagagttatagattctggaccagtagatgccttt
ggtgaaaaaggagagcctggagtttcaggtttgcctggactgaaaggtcaaaaaggtgaa
aaaggtttccctggtatacaaggagtcccaggacctccaggtcaaccacttccagacagg
gtaggatcacctggtgtccctggagagagaggtgaaaaaggtgaaaagggttctccagga
ttctctttacccgggccccctggaagagatggtttcccaggtcccccggggttgcctggc
ccaccaggtcctccaggcaaaacagatggaattgatcaatgccagcagggagaacctggt
gcaccaggtagtcctggacttccaggaagagatggattgccaggagagatgggagagaaa
ggtgacaaaggtgaatcctgtgccttatgtgatgaagtaggacctcctggacttccagga
ccacaagggcctccgggtccagcaggttttccaggacaatcaggtttcaagggtgacaga
ggcttacctggacttgatggccttccaggggtacctgggcctcccggcactccaggactt
atgggcagccctggggcaaaaggagaaccaggagatttttcttatgattctatcctgaaa
ggtgaaaagggagatcctggtttcccaggacaaccaggtactcctggaagagaaggaaga
ccaggaaaagatggattgccaggtctccagggtccgaaaggagcatcaggtacagctggc
ttgaaaggagagcgtggtccccctggccaacctggattccctggagtacgtggtgaaaga
ggttttcctggccctcctgggataggcactgcagggttgcccggtgacaaaggagacaga
ggctttgctggaaccccaggtttaccaggccttccaggagcaaagggtgaagcaggacga
actgtaccgctccctggccctcctggtgcggatggccttcctgggccacctggtttccct
ggaccccaaggtgacaaagggaatcctgggcttccaggtagacccggcctgccaggagaa
aaaggtgctgttgggcagccaggtatagggttccctggacctccggacccaaagggtttc
caaggtcagcctggctcgcctggtctgccggggactccgggaacccctggcctggatggt
ttgcctggtataccaggtttacaaggtcaaaaaggtgaacctggtgtaggtctccctggc
cctaagggattgccaggccccccaggcccatctggcatccctggagaaaaggggagtcca
ggactgcctggcttacgtggcgagcaaggctttccaggcatacctggacagcaaggattc
agaggcgaccccggcctcccaggactgcaaggcnttgcagggccctccggcacgccgggg
ctgggcccgcagggattgccgggacctgccgggcagccgggaccccagggaccgccagga
tttcctggaataaaaggagacaggggcttccctggtatcccaggtctagatatgccagga
ccaaaaggggacaaaggtagccagggccagcctggagtaccagggtctgtggggttacct
ggcctgccaggtccacagggggccgttggactgaaaggatcggcaggagccaaaggagaa
atgggagttatgggaactcctggattgccaggaactcctggaccagttggagatcgaggg
ttgcctggtgaaaaaggtagccagggtttcaaaggtgtagttggaccacagggtgatcct
ggtgtcaaaggagataaaggtgaagccggtctcccaggaaaacctggaacgatggacacc
atggacatggttagtctgaaaggccaaaagggagatcaaggagaaaaaggggaccatgga
gcaacaggagagaaagggttacgtggggaatatggagaaccaggaattccagggaaggat
ggtgaacctggtactccaggacatccaggaccaaaaggtgatcaaggccccccagggtac
ccaggggatccaggaattccaggacaaaaaggatcggttggtgaaatgggtttgccagga
acacctggagaaaagggtctgccgggagtaccaggttcaccaggcacaccagggttccct
gggncaaaaggtgaaaaaggagacaaaggagcaccaggttttcctggaattggctttcca
gggtctcctggtgagaagggagaaccaggaagaacgggtagtccaggtttatctggagat
aagggtgaaaagggcagtgcaggaattcctggaatgccgggtgccccaggtcccaaagga
tcccctggcatggcaggatttccaggcaaccctggccgccatggagaaaagggtgaaaaa
ggacttcctggcttaagtggcattccaggtttaaaaggagaaccaggtgaacctggcgtt
ccgggtcctgctggttccattggacagaagggtgaaccaggttatgatgggattccgggt
gcagctggtgcaaagggtgaacaaggtattccaggtagaggacttccaggatttcctggc
gcaaagggagataaaggtgcgaaaggtgatgtgggttttccaggatccccaggaagtccg
gggatcccaggcctgaaaggagaaccaggatacgctggtccaccaggcccgaagggcagc
caaggtcttcctggactaccaggaagtgcaattgcgggccctaaaggagacagaggaccc
caaggccaacctggccttccaggtttaccaggtccgacagggccaccaggacccccaggt
ctgaaaggggccaaaggagagcaggggagcaatggctggcctgggattcctgggggtcca
ggagtcaaaggtgatccgggtttccagggaccgccaggtggtcctggtttaccaggagat
attggtcaaaagggtgatctgggacctccaggagttccaggcgttccaggtccaaaagga
tctcctggcttcccaggccttaagggtgagcgaggtgaccaaggtcttcctggatctaaa
ggtttacaaggcccaccaggcccaccaggtgcttttcagcttgttaaaggggatcctggc
ttacctggccctgtaggaccagttggtctcaaaggattcccaggacttccaggtcctaaa
ggacagcaaggggtgacaggaccttcaggtgtacctggaccacctggtagtccagggttt
gatggcaaacctgggcaaaaaggagaagttggtccttacggtcctccagggcccagagga
ttccctggtccacctggccctgaaggtttgcctggggctatgggcccaccaggtgcacca
tctgttgcccatggcttccttgttaccagacacagtcaaaccactgaagaaccatcgtgt
ccatttggaacaaggctgatttaccatggctactccttgctttatgtacaaggcaatgaa
agagcacatggccaagatctgggcacagcaggaagctgtcttcgtaaatttagtaccatg
cctttcttattctgcaatatcaacaacgtatgtaactttgcatcaaggaatgactattcc
tactggctgtccactcctgaacccatgccaatgaatatggctcctatcactggtgataat
atcagaccattcatcagcagatgctctgtgtgtgaagctcctgctatggtaatagctgtt
cacagtcaaacaattcaaataccaccatgtcctgaaggctggagttcactttggattggt
tactcctttgtcatgcacaccagtgctggtgcggagggctctggccaggccctggcgtct
cctggttcctgcctagaggagtttcgcagcgctcccttcattgaatgccatggccggggc
acctgcaattattatgcaaatgcttacagcttctggcttgccactatagagaggaatgag
atgttcaagaaaccgactccctcaactttgaaagcaggggatctgcgctcaaatgttagc
cgttgtcaagtctgtatgagaaaaacataa
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