Glutamicibacter creatinolyticus: GcLGCM259_2883
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Entry
GcLGCM259_2883 CDS
T05997
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
gcr
Glutamicibacter creatinolyticus
Pathway
gcr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
gcr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
GcLGCM259_2883
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gcr03400
]
GcLGCM259_2883
Enzymes [BR:
gcr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
GcLGCM259_2883
DNA repair and recombination proteins [BR:
gcr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
GcLGCM259_2883
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QCY48590
UniProt:
A0A5B7WZ62
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All DBs
Position
3210703..3213204
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AA seq
833 aa
AA seq
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MARRGGEQSVSIDGHTLRVSNLDKVLYPQTGTTKGEVIDYYARVAPTLISYAAWRPATRK
RWVEGVGTEGKPLQPFFRKDLEDSAPSWIPTGKIQHSDHVNTYPLVNEPAVLAWLGQVAA
LEIHVPQWRFDPTLNPQNPDRMVLDLDPGPGAGLAECVQVAKWCREILEGMGMQALPVTS
GSKGIHLYAPLDGTHTSEQISAVAREMARSLEQDQPELVVSNMKRSLREGKVLVDWSQNN
AAKTTICPYSLRGRAHPTVAVPRHWEELEDPDLRHLEYPEVLQRLEEGNDPLTPLADTAS
TDRLATYRSMRDAAKTPEPVPEPRTKTTLRTVGQQATFVIQEHQARRLHWDFRLEHDGVL
VSWAVPKGPPLRQGVHRLAVMTEDHPLEYASFHGSIPKGEYGAGTVEIWDTGTCRIEEWE
DDKKVIAVLEGRPDGGLEGVPRRFVLIHAKNMGGERNWLLQLTKDQPSEHERSEPEPSEE
PGAPASHPKARATRRTNGNGPRPAQLPELRPMLATAGSLGDIDPDECWSFEMKWDGYRAL
VGTTGGKLSITSRNGKDLTELFPELAEITGLAPQGSILDGEIVALDSTGRPDFGLLQQRL
SSTAKSSRSTAKARSGPGKSDVHLMLFDVLALPGEGGAMQDLTDQVYQVRRERLQQAVRE
GRFIHIPPAHHGAAPDAVATSEELGLEGIVAKECDSSYEPGRRSREWIKIKHQAHQEVVV
IGWRQGQGARSSSFGSLLLAIPDQQGTLHYAGRVGTGFREEQLTQIRARLQKLTRKTPPA
KDVPAADQRDAHWVSPKLVGEVQYSETTRDGRLRHPVWRGWRPDKDPEQVRRE
NT seq
2502 nt
NT seq
+upstream
nt +downstream
nt
atggctcggcggggcggcgaacagagcgtgagcattgacggacacaccctgcgggtcagc
aacctggacaaggtgctgtatccgcagaccgggaccaccaagggtgaggtgatcgactac
tacgcccgggtggcgcccaccctgatcagctacgcggcctggcgcccggccacccgcaaa
cgctgggtcgaaggggtcggtacggagggcaagccgctgcagccgttcttccgcaaggac
ctggaggactcggcccccagctggattcccaccgggaagatccagcattcggatcacgtg
aacacctacccgctggtcaacgaaccagcggtcctggcctggctcgggcaggtggccgcc
ctggaaatccatgtcccgcagtggcgctttgatcccaccctgaacccgcagaacccggac
cgcatggttctggacttggatcccgggcccggggccggactggccgaatgcgttcaggtg
gccaagtggtgccgggaaatcctggaggggatgggcatgcaggcgctgccggtgaccagc
gggtccaagggcatccacctgtatgcgccgctggatggcacccatacttccgagcagatc
tccgcggtcgcccgtgagatggcccgttccctggagcaggaccagccggagctggtggtc
tcgaacatgaaacgctcgctgcgtgaggggaaggtgcttgtggactggagccagaacaac
gcggccaagaccaccatctgcccgtattcgctgcgcggacgcgcccacccgaccgtggcc
gttccccggcactgggaggaactggaggatccggacctgcgccacctggagtacccggag
gtgctgcagcgcctggaggagggcaacgacccgctcaccccgctggccgatacggccagc
acggatcggctggccacctaccgctccatgcgcgatgcggccaagaccccggagccggtg
cccgaaccacgcaccaagaccacgctgcgcacggtcgggcagcaggccacgttcgtcatc
caggaacaccaggcccgccgcctgcattgggatttccggctggaacacgacggggtgctg
gtgtcctgggcggtgcccaagggaccgccgctgcgccagggcgtgcaccggctggccgtc
atgaccgaagaccatccgctggaatacgccagcttccacggcagcatccccaagggggag
tacggggcgggcaccgtggaaatctgggacaccggcacctgccggatcgaggagtgggag
gacgacaagaaggtcatcgccgtgctggagggacgccccgacggtgggctggagggcgta
ccgcgccgcttcgtgctcatccacgcgaagaacatgggtggggagcgcaactggctgctg
cagctgaccaaggaccagccctccgaacacgagcggtccgaaccggaaccaagcgaggaa
ccaggcgcaccggcttcccaccccaaggcccgggccacccgcagaactaacggcaacggg
ccgagacccgctcagctgcccgaactgcgtccgatgctggccaccgccggaagcctgggg
gacatcgacccggacgaatgctggtcctttgaaatgaaatgggacggctaccgcgccctg
gtgggcaccaccgggggaaagctgagcatcaccagccgcaacggcaaggacctgaccgag
ctgttccccgaactggctgaaatcaccgggctggccccgcagggcagcatcctggacggg
gaaatcgtggcgttggattccacggggcgccccgacttcgggttgctgcagcagcggctg
tccagcaccgccaagtcctcgcggtccaccgccaaggcccgctccggtcccgggaaatcg
gatgtgcacctgatgctctttgacgtgttggcattgcccggtgagggtggagcgatgcag
gacctgaccgatcaggtctaccaggtgcgccgcgaacggctgcagcaggcggtgcgcgaa
ggccgtttcatccacattccaccggcccaccacggggcggcgccggacgcggtggccacc
agtgaagagctggggctggaaggcatcgtcgccaaggaatgcgacagcagctatgaaccg
ggccggcgcagccgcgaatggatcaagatcaagcaccaggcccaccaggaagtggtggtg
atcggctggcggcagggccagggggcgcgcagctccagctttggctccctgctgctggcc
atccccgaccagcagggcaccttgcactacgccgggcgggtgggcaccgggttccgcgag
gaacagctgacccagatccgcgcccgccttcagaagctcacccgcaagaccccgccggcc
aaggacgtgccggccgccgatcagcgcgacgcccactgggtcagcccgaagctggtcggc
gaggtgcaatacagcgagaccacccgggacgggcgcctgcgccatccggtgtggcgcggc
tggcgcccggacaaggacccggagcaggtccgccgcgaataa
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