Gracilibacillus caseinilyticus: MUN88_04990
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Entry
MUN88_04990 CDS
T09432
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
gcs
Gracilibacillus caseinilyticus
Pathway
gcs03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gcs00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MUN88_04990 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gcs03021
]
MUN88_04990 (rpoC)
03400 DNA repair and recombination proteins [BR:
gcs03400
]
MUN88_04990 (rpoC)
Enzymes [BR:
gcs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MUN88_04990 (rpoC)
Transcription machinery [BR:
gcs03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MUN88_04990 (rpoC)
DNA repair and recombination proteins [BR:
gcs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MUN88_04990 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
UOQ49463
LinkDB
All DBs
Position
complement(1010448..1014059)
Genome browser
AA seq
1203 aa
AA seq
DB search
MLDVNNFEFMKIGLASPNKIRSWSFGEVKKPETINYRTLKPEKDGLFCERIFGPQKDWEC
HCGKYKRVRYKGVVCDRCGVEVTKAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM
SPRALEEVIYFAAYIVTDAGDTALEKKQLLSEKEYRAYRDKYGSSFKAQMGAEAIKKILQ
DIDLEKEVELLREELKSAQGQRRTRAIKRLEVLEAFRNSGNDPSWMIMDVLPIIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPSIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPHLKMYQCGLPKE
MAVELFKPFIMKELVERGLAHNIKSAKRKIERLHEEVWDVLEDVIKEHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARILMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLERESAIGEGMVFKDLNEALIAYQNGFVHLHTRVAIQ
PSSLNKEAFTDEQRSRLMITTVGKLIFNNMLPESFPYMNEPTQENLEIATPDKYFVDAGV
NVKEEIAKRDIILPFKKGILGDIIAEVFKKFKISETSKMLDRMKDLGFKYSTKAGITVGV
SDIVVLSEKEEILNEAQAKVDKVLKQFRRGLITDEERYDRVISVWSQAKDTIQDKLMKSL
NPRNPIFMMSDSGARGNASNFTQLAGMRGLMANPAGRIIELPIKSSFREGLTVLEYFIST
HGARKGLADTALKTADSGYLTRRLVDVAQDVIIREEDCGTDRGLTVSAIKEGTEMIEPLI
DRLIGRTAFQNVKHPETGEIIVEKNEVISEDAAKEIVEADIEDVIIRTVFTCNTKHGACK
KCYGRNLATGEEVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGSDITQGLPRIQEIF
EARNPKGQAVISEIFGTVEDVTEVKDKQEIVVRGQVETKTYTSPYGSRLKVSIGEEVEAG
QALTEGSIDPKELLKVKGIDGVQSYLLKEVQKVYRMQGVEIGDKHVEVMVRQMLRKVRVA
DSGDTEVLPGSLLEIHQFKDANKQSLLTGGQPAVGRPVLLGITKASLETDSFLSAASFQE
TTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTGMQRYRRIQEKLAQDPNQVEKTDSEE
VIQ
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
ttgttagatgtaaataattttgaatttatgaaaataggtttagcgtcaccaaacaagatt
cgttcttggtcatttggtgaagtgaaaaagccggaaaccattaattaccgtacattaaaa
ccagaaaaagatggtttgttctgtgaacgtattttcggtccgcaaaaggactgggagtgt
cattgtggtaaatacaaacgtgtacgatataaaggtgtagtctgtgatcgttgtggtgta
gaggttacgaaagcaaaagtacgtcgtgagcgcatgggccacattgaattagcagcacca
gtatcccatatctggtattttaaaggaattccaagtcgtatggggctagtgttagatatg
tctcctcgagcgttagaggaagtaatttatttcgctgcttacatcgttacagatgcaggg
gatacagcgttagaaaagaaacaacttttatccgaaaaagaataccgcgcatatcgtgac
aaatacggcagttctttcaaagcccaaatgggtgcagaagcaatcaagaaaattcttcag
gacatcgatcttgaaaaagaagtagaattgcttcgtgaggaattaaagtcagctcaaggt
cagcgcagaaccagagcgattaaacgtctggaagtattagaggcgttccgtaactctggt
aacgatccaagctggatgattatggatgttcttccgatcatcccgccggaattgcgacca
atggtgcaattagatggtgggcgttttgctacatctgatttgaatgatctatatcgtcgt
gttatcaatcgtaataaccgactaaagagattgcttgatttaggtgcaccaagcattatt
gttcaaaacgaaaaacgtatgctgcaagaagctgtcgatgcgttgatcgataacggtcgt
cgcggtcgtcctgttacaggaccaggtaaccgtccacttaaatctctttcacacatgctg
aaagggaagcaaggccgtttccgtcagaacttgttaggtaaacgtgtagattattctggc
cgttctgttatcgtcgtaggaccgcacttgaaaatgtatcaatgtggtctaccgaaagaa
atggcagtggaattgtttaagccgtttatcatgaaagagttagtggagcgaggtttagct
cacaatattaaatctgcaaaacgtaaaattgaacgtcttcatgaagaagtttgggatgtg
ttagaagatgtgattaaagagcacccagttctattaaaccgtgcaccaactctacaccgt
ctaggtattcaagcttttgaacctacattggtagaaggtcgcgcaatccgtcttcaccca
ctagtatgtacagcatacaacgctgactttgatggggaccaaatggcggtacacgtacca
ttatcagcagaggcgcaagcagaggcacgtattttaatgctagctgcacaaaacatcctg
aacccgaaagatggaaaaccagttgtaacgccatctcaggatatggtacttggtaactac
tatttaactcttgaacgcgagagtgctattggtgaaggtatggtgtttaaggacttgaac
gaagcattaatcgcctaccagaacggttttgtacatcttcacacacgtgtagccattcaa
ccgtcttctctgaataaagaagcgttcacggatgagcaacgcagtagattaatgattaca
acggttggtaagctaatctttaacaatatgcttccggaatcattcccgtacatgaatgag
ccgacacaggaaaacttagaaatagcaacaccagataagtattttgttgacgctggggta
aatgttaaagaagagattgcgaaacgtgatatcattttaccattcaaaaaaggtattctt
ggagatattattgcggaagtattcaagaagttcaaaatcagcgaaacttccaaaatgctt
gaccgtatgaaagatctaggcttcaagtactctacaaaagcaggtattacagtaggtgta
tctgatatcgttgtgctttctgaaaaagaagaaattctaaatgaggcacaagccaaagta
gataaagtattgaagcaattccgcagaggtttaattacggatgaagagcgctatgatcgt
gtcatttctgtatggtctcaagcgaaagatactattcaggataaattaatgaagtccttg
aatcctcgtaaccctatctttatgatgagtgattcaggtgcccgtggtaacgcatctaac
tttacccagcttgcaggtatgcgtggtctaatggccaacccagctggtcgaatcattgag
ttaccgattaaatcaagcttccgtgaaggtttaacagtactcgagtactttatttcaaca
cacggtgcacgtaaaggtcttgctgatactgcacttaagacagccgattctggctactta
acaagacgacttgttgacgttgcgcaagatgttattatccgtgaagaagattgtggaaca
gatcgtggattaactgtatcagctattaaagaaggtactgaaatgatcgaaccattaatc
gaccgactaatcggcagaacggcattccagaacgtgaagcatcctgaaacaggagaaatc
attgttgagaaaaatgaagtaatctctgaagatgctgccaaggaaattgtggaagcagat
attgaagatgtcatcatcagaactgtctttacatgtaacaccaagcacggtgcatgtaaa
aaatgttacggtcgaaacttagctacaggtgaagaagtcgaagtgggtgaagcggtaggt
attatcgctgcacaatctatcggtgagcctggtacacagttaaccatgcgtacattccac
acaggtggggtagcaggtagcgatattactcaaggtttaccgcgtatccaagagatcttt
gaagcgcgtaatccaaaagggcaggcagtaatttctgaaatcttcggtacggtcgaagac
gttacagaagtgaaagataaacaagagattgttgtgcgtggtcaagtagaaacgaaaacg
tacacttcaccatacggttcaagacttaaagtctctatcggtgaggaagtagaggcgggt
caagcgttgacagaaggttcaatcgatccgaaagaattattaaaagttaaaggtatcgat
ggcgtacaatcttatctgttgaaagaagtgcagaaggtataccgtatgcaaggggtagaa
atcggtgataaacacgtagaagtaatggttcgtcaaatgcttcgtaaagttcgtgttgca
gattctggtgatacagaagtattacctggatcattgctcgaaattcaccagttcaaagat
gccaacaaacaatcgttacttacaggcggtcagccagcagtaggtcggccagtactacta
ggtattacgaaggcatctcttgaaacagactccttcttatcagccgcatcgttccaagag
accacaagagtcttaacagatgcagcaatcaaaggcaaacgggatgaattactaggactt
aaagagaatgttatcattggtaagctggttcctgcaggtacaggtatgcaacgatatcga
cgcattcaggaaaaacttgcacaagatcctaaccaagtagaaaagacagactctgaagaa
gtcattcaataa
DBGET
integrated database retrieval system
