Gracilibacillus caseinilyticus: MUN88_05375
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Entry
MUN88_05375 CDS
T09432
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
gcs
Gracilibacillus caseinilyticus
Pathway
gcs03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gcs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MUN88_05375 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gcs03400
]
MUN88_05375 (mfd)
Enzymes [BR:
gcs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MUN88_05375 (mfd)
DNA repair and recombination proteins [BR:
gcs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MUN88_05375 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
RecG_dom3_C
Zot
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
UOQ49520
LinkDB
All DBs
Position
complement(1091371..1094904)
Genome browser
AA seq
1177 aa
AA seq
DB search
MYELKQYLQNRDDFYSIIDGINSGLKEQLVSGLSGSAKSMFAGLIQESTKKKSIIITHQL
SQAQQLYEDLQEFSADQHIYLYPVNELLASELAVASPELLSQRIVALNNWLNQDNGILIA
PVAALKRMLPPMTYWQEYQLDVALDQVIDIDQTLTKLIEMGYVRQDMTASPGEFSLRGGI
LDIYPITEDQPIRIELFDDEIDSIRYYDAESQRSLEKQDKIKIYPTTELLLKEHDLVAAA
QKLEASLHDTMKKIKNKSDQQILTESITADIERLNHCERFQDMRKYVAFFYEENYSLLDY
LPEDGFVILDEMSRIQETALHLDNEEQEWLKDNLQRGKAVRDLQLSFDWHDAWQRMKQQR
LYLSVFLRHIPNTNPANIVNLSCRAMQQFHGQMNLLQNEMERWRKADYSVIILAPNHSRM
EKIQSVLEDYQMNAVISEELPSLPVSQPVITIGNVSGGFELPMHKLAVITENELFKQKTP
RKKRKQKISNAERIKSYQELQVGDYVVHTNHGIGRYIGIETLAVNGLHKDFMLLKYSGDD
KLFVPIDQIDLVQKYVGSEGKEPKLYRLGGNDWNKVKRKVQSKVEDIADDLMKLYAEREA
AKGYAFSPDTEMQRDFEASFPYQETEDQLRCIEEIKQDMEKERPMDRLLCGDVGYGKTEV
AIRAAFKAISDGKQVAILVPTTILAQQHYETVLERFQDYPINIGLLSRFRTRKQQTETLK
GLKNGTVDIVIGTHRLLSKDVVYKELGLLIVDEEQRFGVKHKEKIKQLKSNVDVLTLTAT
PIPRTLHMSMLGVRDLSVIETPPENRFPIQTYVMEYNAPLVREAIERELSRGGQIFFLYN
RVESIDKVAQDIQMLVEDARVTVAHGQMNESELENVMFSFLEGEADVLVSTTIIETGVDI
PNVNTLIVNDADKMGLSQLYQLRGRVGRSNRVAYAYFTYQQDKILTEVSEKRLQAIKEFT
ELGSGFKIAMRDLSIRGAGNILGAQQHGFIDSVGFDMYSQMLNEAVEAKRQGKAVEDVQP
FEVDLDLKVDAYIPDQYIPDEKQKIDMYKRFQAIYSQEDVHDLRDELIDRFGDYPEEVAN
LFHVSTLKMMSKRERIESITERKQKIEVLVDGDRSQEIDGAKLFEFANQYGRQIQLGTED
RKLKVTFRFDQSQYNNRYELLEEFIQTLTEMKQTPVA
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgtatgaactaaagcaatatcttcaaaaccgcgatgatttctattcgattattgatggg
attaactccggtttaaaagaacaacttgtatcaggtttatcgggttccgcaaaaagcatg
tttgctgggttaatccaggaatcaacgaaaaagaagtctataatcattacgcatcaatta
tcacaggctcagcaattatatgaggacttgcaggaattctcggctgatcagcacatttat
ttatatcctgttaacgaattgttggcctctgaattagcggtggcaagtccagaattatta
agtcagcgaatcgtggctttaaataattggttgaatcaggataatggcatattgattgca
ccggtagctgctttgaagcggatgttgccaccgatgacatactggcaggaataccagctg
gatgttgcccttgatcaagtgattgatatcgatcagacgcttacaaagttaatcgaaatg
ggttatgtaagacaggatatgacagcaagccctggagaattcagtttacgtggaggtatt
ttagatatctatcccattacggaagatcagccaattcgtattgaattatttgatgatgaa
attgactctattcgttattatgatgcggaatcgcaacgatcattagagaagcaagacaag
attaagatctatccaacaacggaattgttactgaaggagcatgatcttgttgcagcagca
cagaagctggaagcatcgcttcatgacacaatgaaaaaaatcaaaaacaaatcagatcag
caaatattgacggagtcgataacggctgacatagaacgactaaatcattgtgaacgtttt
caagatatgagaaagtacgtcgcctttttctatgaagagaactatagtttactagactat
ttaccagaagacgggtttgttattttggatgaaatgagcagaatccaggaaacagcctta
catttagataatgaagaacaagaatggctgaaggataatctccaaagagggaaagctgta
cgagacttacaattgtcgtttgactggcatgatgcatggcaacgtatgaaacaacaacgt
ttgtatctctcggtattcttgcgtcatataccgaacacgaacccagcaaatattgtgaac
ttatcttgccgtgctatgcaacaatttcatgggcaaatgaatttattgcaaaatgaaatg
gagcgttggcgcaaggcggattactccgttattattttggcaccaaatcacagcagaatg
gaaaaaattcagtcagtactggaagattaccaaatgaatgccgtgatcagtgaggaatta
ccatccttacctgtttcgcagcctgtgattacgattggcaatgttagtggtgggtttgag
ttaccaatgcataaattggcggtcattaccgagaatgaattatttaagcaaaaaactcca
cgaaaaaaacgcaaacaaaaaatatcgaacgcagaacggattaaaagctatcaggagctg
caagttggcgattatgtcgtgcataccaaccatggtattggacggtatattggtattgaa
acattagcagtgaacggattgcataaagattttatgttgctcaaatattccggtgacgat
aaactgtttgtaccaatcgaccaaattgacctcgttcagaaatatgtaggctctgaaggt
aaagagccgaagttataccgtctgggtggaaacgactggaataaagtaaaacgaaaagtt
caatccaaagtagaagacattgcagatgatctgatgaagttatacgcagaaagagaagct
gccaaaggctatgctttttctccagatacggaaatgcaacgtgattttgaggcatcattc
ccataccaggaaacagaggaccaattacgttgtattgaagaaattaaacaggatatggag
aaagaacgtccaatggatcgcctgctttgtggcgatgttggctatggcaaaaccgaagta
gctatccgtgctgcatttaaggcgatatcagatgggaaacaagtggcgatactcgttccg
acgaccattctggcacagcagcactatgaaacagtattggagcgttttcaagattatcca
ataaatattggtttactcagccgcttccgaacacgtaagcaacaaacggaaacgttaaaa
ggattaaaaaatggtaccgtcgatattgtgatcggtacgcaccggttgttgtctaaagat
gtggtatataaagaattaggattactgattgttgacgaagagcaacgatttggtgtgaag
cataaggaaaaaatcaaacagctaaaatcaaatgtcgatgtccttacactaacagcgaca
cctattccgcgaacattacacatgtcgatgctaggggtgcgtgatctatctgtaattgaa
acaccaccagaaaatcgtttcccaattcagacctatgtcatggaatacaatgcaccttta
gtaagagaagcgatcgaaagggagttgtcccgtggcggtcaaatattctttttatacaat
cgtgtcgaatcgattgataaggtcgcacaagacatccaaatgcttgtagaagatgcacgt
gtgacagttgctcacggacagatgaatgaatctgaattggaaaatgttatgttttctttc
ttagaaggagaggcagatgtattagtgagtaccacgattattgaaactggtgtggatatc
ccgaacgtgaatacgttaattgtcaatgatgcggacaaaatgggacttagtcagctctat
caattgcgcggacgagtaggtcgttccaatcgtgttgcttatgcgtatttcacctatcag
caggataaaattctaacggaagtgtccgagaagagattgcaggctatcaaggaatttacc
gagttaggatcaggctttaaaattgcgatgcgtgatttatcgattcgaggtgctggtaat
atattaggggcgcaacagcatggatttatcgattcagtaggtttcgatatgtattctcaa
atgctgaatgaagcggtagaagcgaaaagacaaggcaaagcagtggaagatgtgcagcca
tttgaagttgatttagacttgaaagtggatgcttatattccagatcaatatattccggat
gagaaacaaaagattgatatgtataaacgattccaagctatttactcgcaagaggatgtc
catgaccttcgtgatgaattaattgatcgttttggtgattatccagaagaggtggcaaac
ctattccatgtgtcgacgttaaaaatgatgtccaaacgggaaagaatcgaatccattacg
gaacgaaaacaaaaaattgaagtattggttgacggcgacagaagtcaggaaattgacgga
gctaaattatttgagtttgccaatcaatatgggcgtcaaattcaacttgggaccgaagac
cgcaaattaaaagtaacattcaggtttgatcaatcccagtataacaatcgttatgagctg
ttagaagaatttattcagactctaactgagatgaaacaaacgccggttgcataa
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