Gracilibacillus caseinilyticus: MUN88_18455
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Entry
MUN88_18455 CDS
T09432
Symbol
rnjA
Name
(GenBank) ribonuclease J1
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
gcs
Gracilibacillus caseinilyticus
Pathway
gcs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gcs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MUN88_18455 (rnjA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gcs03019
]
MUN88_18455 (rnjA)
Messenger RNA biogenesis [BR:
gcs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MUN88_18455 (rnjA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
DUF4453
Raco_middle
Motif
Other DBs
NCBI-ProteinID:
UOQ48011
UniProt:
A0ABY4F0Q0
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All DBs
Position
3841279..3842946
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AA seq
555 aa
AA seq
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MKFVKNDQTAVFALGGLGEIGKNTYGVQFQDEIILIDAGIKFPEDELLGIDYVIPDYTYL
VQNQDKIKGLFITHGHEDHIGGIPYLLREINVPIYAGKLAMGLIRNKLDEHGLLRKAKLH
TYQEDDIFKFRKTAVSFFRTTHSIPDSYGIVVKTPPGNVVHTGDFKFDFTPVGEPANLSK
MAEIGKEGVLCLLSDSTNSEVPGFTLSERVVGDSINDIFSRVDGRLIFATFASNIHRLQQ
VVEAAVKHNRKIAVFGRSMEGAIKIGQELGYIRAPKNTFIEAHQLNQLPANEVTILCTGS
QGEPMAALSRIANGTHRQIQIIPGDTVVFSSSPIPGNTLSVSRIINQLYRAGAEVIHGPL
NDIHTSGHGGQQEQKLMLRLIKPKYFMPIHGEYRMLKEHTKLADSCDIPYKNSFIMDNGE
VLALGKDHAAIAGKIPSGSVYVDGSGIGDIGNIVLRDRRILSEEGLVIVVVSINMKEFQI
ASGPDIISRGFVYMRESEDLINEAQKLVSNHLNKVMERRTTQWSEIKNEITDTIAPFLYD
KTKRRPMILPIIMEV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttgtaaaaaatgatcaaactgcagtttttgcattaggtggtttaggtgaaatt
gggaaaaacacgtacggtgttcaatttcaggacgaaatcatcttaattgatgcaggtatt
aaattccctgaagacgagttattgggaattgattatgtgatacctgactacacttacctt
gtgcaaaatcaggacaagataaaaggattatttatcactcatggtcacgaagaccatatt
ggtggtattccttatttacttcgcgagataaatgtgcctatctatgcaggtaaattagca
atgggactaattcgtaataaattggatgaacacggtcttcttcgtaaggcgaaattacac
acttatcaagaagatgacatttttaaattcagaaaaacagctgtgtcgttctttagaaca
acacacagtattcccgattcctatggtattgttgtgaaaacccctcctggtaacgttgtg
cataccggagattttaaatttgattttacaccggtcggagaaccagccaatttatcaaaa
atggctgaaatcggtaaagaaggtgtactatgtctgttatcagatagtacgaacagtgaa
gttcccggatttacgttatctgaacgagtagttggtgacagtattaatgatattttctct
agagttgatggcagattaatatttgctactttcgcatccaatattcaccgcttgcagcaa
gtcgtggaagccgccgttaaacataaccgtaaaattgccgtattcggccgcagtatggaa
ggtgccataaaaattggacaagaacttggctacattcgtgctccaaagaatacatttatt
gaagcacaccaactcaatcagcttcctgctaacgaggtgaccatcctatgtactggttct
caaggggaaccaatggcggcattatcaagaattgctaatggtactcaccgccaaattcaa
attatacctggtgacacagttgtattctcttcttcaccaatccctgggaatacgctaagt
gtcagccgaattatcaatcaattgtatcgcgcaggtgcagaagtcattcacggaccatta
aatgatattcatacatctggtcacggcggacaacaagaacaaaaattaatgctacgttta
attaaaccgaagtattttatgccgattcacggggaatatcgtatgttaaaagaacatacg
aagcttgctgacagttgtgatatcccttataagaacagctttatcatggataatggtgaa
gtattagcgttaggtaaggatcacgctgcaattgcagggaaaatcccttctggttctgtc
tatgttgacggtagcggtattggtgatattggtaatatcgtattacgtgatcgacggatc
ctttctgaagaaggacttgtcatcgttgtcgtcagtatcaatatgaaagaattccaaatt
gcttccggtccggatattatttcacgaggtttcgtgtatatgagagaatctgaagactta
ataaacgaagcacaaaagcttgtttctaatcatttgaacaaagtaatggagcgtcgcaca
acgcaatggtctgaaatcaaaaacgaaattaccgataccatcgctccattcctgtacgac
aaaacaaaacgacgcccaatgatcttacctattatcatggaagtctaa
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