Gracilibacillus caseinilyticus: MUN88_19655
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Entry
MUN88_19655 CDS
T09432
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
gcs
Gracilibacillus caseinilyticus
Pathway
gcs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gcs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MUN88_19655 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gcs03019
]
MUN88_19655 (rnr)
03016 Transfer RNA biogenesis [BR:
gcs03016
]
MUN88_19655 (rnr)
Enzymes [BR:
gcs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
MUN88_19655 (rnr)
Messenger RNA biogenesis [BR:
gcs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MUN88_19655 (rnr)
Transfer RNA biogenesis [BR:
gcs03016
]
Prokaryotic type
tRNA degradation factors
MUN88_19655 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_HELZ2
OB_Dis3
S1_RRP5
RNase_II_C_S1
WHD_GPIID
Cullin_AB
TFIIE_beta
Motif
Other DBs
NCBI-ProteinID:
UOQ48228
UniProt:
A0ABY4EWI7
LinkDB
All DBs
Position
complement(4074031..4076310)
Genome browser
AA seq
759 aa
AA seq
DB search
MSTMQQQILNYFNENATKPLSVQEIEEVLQLDESEQFTELMKALNELENAGELIRTRKNR
YGLPEKMNLIRGSIQMHAKGFAFLIPEEEGMADVYINHADLGSAMNGDKVFVRVDHHDDT
SKRAEGVVVRIIERFTSEIIGTYEDNGAFGFVIADDKRIPNDIFVPKGEAKGAVGGHKVI
VEITKYPEGRKSAEGRVVNILGHKNDPGMDILSIIYKNGITIDFPEDVLKQAESISKEIP
EKDLEGRKDLREETIVTIDGADAKDLDDAVTVKKLENGNYKLGVYIADVTHYVEENSPID
REAYERGTSVYLVDRVIPMIPHRLSNGICSLNPQVDRLVLGCDMEINPKGEVVNHDIFQA
VINTTERMTYKAVNQILVDKDQEQIDRYQSLVPMFEDMEELAEVLRKKRFGRGAIDFDFK
EAQVLVDQEGKAEDVVIRERSVGERLIEEFMLCANETVAEHFHWMDVPFIHRIHEDPDPA
KLQTFFEFIARFGYVVKGSSNEIHPQALQNVLDEVAGTEEDMIISKLMLRSMKQAKYDPQ
GIGHFGLATEFYTHFTSPIRRYPDLIVHRLIRTYLIEKKLDQNTRHHWKDKMPDIAKQAS
LKERAAVDAEREVDDLKKAEYMQDKIGEEYDGVISSVTNFGLFVELPNTVEGLVHVSYLT
DDYYHFDERAYAMIGERTGNVFQVGDAITVKVAQVNLDERSVDFEIVGMKPKKRRSKPED
KVIQARRDKGGLKKTAKKSQNSSKPNNNKKQGQKKKKKR
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacaatgcaacaacaaattctcaactattttaacgaaaatgccaccaaaccttta
tcggttcaagaaatcgaagaggtattgcaattagatgaatcagaacaattcactgaatta
atgaaagctttgaatgagctggaaaacgccggagaactgattcggactcgtaaaaaccgt
tatggattaccagagaaaatgaatttaatacgcggtagtattcaaatgcatgctaaaggt
tttgccttcttgattccagaagaggaaggaatggcggatgtatacattaaccatgctgat
cttggttctgcaatgaatggcgataaagtgttcgtccgtgtggatcatcatgatgatact
agtaaacgggcggagggtgttgtcgtccgtatcattgaacgattcacatcagaaattatc
ggtacatatgaagataatggagcgtttggattcgtaattgccgatgacaaacgaattcct
aatgatatctttgtaccgaaaggcgaagcaaaaggtgctgttggtggccataaagttatt
gttgaaataacaaagtatcctgaaggacgtaagagtgctgaaggacgagtagtaaatatc
cttggtcacaaaaatgacccaggaatggatatattatcaatcatttataagaatggtatt
accattgattttccagaggatgtattaaaacaagcagagagtatttccaaggaaatacct
gaaaaagacttagaaggtcgtaaagatttacgcgaagaaacgattgtgacgattgatggt
gctgatgccaaggacttagacgatgcagtaacagtgaaaaaattagaaaatggtaattat
aagctaggtgtatatattgctgatgtcacgcattatgtggaggagaactctccgatcgat
cgtgaagcttatgaaagaggaacgagtgtttacctagtggatcgtgttataccgatgatt
ccgcatcgactttccaatggtatctgttcattaaatcctcaagtagatcgccttgtattg
ggttgtgatatggaaattaatccaaaaggtgaagtagtcaaccatgatatctttcaggca
gtcattaatacaacagaaagaatgacatataaggcagttaaccaaatactagtggacaag
gatcaagaacaaattgaccgctatcaatcccttgttccgatgtttgaggacatggaagaa
ttagcggaagtattgcgtaagaaacgttttggccgtggtgctattgattttgattttaaa
gaagcacaagtattggttgatcaagaaggtaaggcagaagatgttgtgattcgggagcgt
tccgttggggagcgattaattgaggaatttatgctttgtgccaacgaaactgttgctgaa
cattttcattggatggatgttccgttcattcaccgtattcacgaagatcctgatccagca
aaattacaaacattctttgaatttattgctagatttggatatgttgttaagggtagttcc
aatgaaattcatccacaggcattgcaaaatgtattagatgaagtagcaggtacagaagaa
gatatgattatttccaaattaatgctgcgttccatgaagcaagcaaaatatgatccacaa
ggaattggtcacttcggtttagctacggaattttatacgcatttcacgtcaccaattcgt
cgttatccggatttaattgtgcaccgattaattcgtacgtatttgattgaaaagaaacta
gaccaaaatacgagacatcattggaaagacaaaatgcctgatatagcaaagcaagcttca
ttaaaagaacgtgcagctgtagatgctgaacgtgaagttgatgatctgaagaaggcagaa
tatatgcaagataaaatcggagaagaatatgatggtgtgatcagctctgttaccaacttc
gggttgtttgtggaattgccaaacactgttgaaggtcttgtacacgtaagctatttaaca
gatgattattatcattttgatgagagagcgtatgccatgattggtgagcgaacaggcaat
gtctttcaagttggcgatgcgatcacagtaaaagtagcacaggttaacttagatgaacgc
tccgtcgattttgaaattgtcggtatgaagccaaaaaaaagacgttcaaagccagaagat
aaggtaattcaagctcgtcgagataaaggtggactaaagaaaacggcaaaaaaatcacaa
aattcgagtaaaccaaacaacaataagaaacaaggtcaaaagaagaaaaagaaaaggtaa
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