Geobacillus sp. C56-T3: GC56T3_0099
Help
Entry
GC56T3_0099 CDS
T01245
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
gct
Geobacillus sp. C56-T3
Pathway
gct03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gct00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GC56T3_0099
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gct03021
]
GC56T3_0099
03400 DNA repair and recombination proteins [BR:
gct03400
]
GC56T3_0099
Enzymes [BR:
gct01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GC56T3_0099
Transcription machinery [BR:
gct03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GC56T3_0099
DNA repair and recombination proteins [BR:
gct03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GC56T3_0099
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_3
RNA_pol_Rpb1_2
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
ADI25173
LinkDB
All DBs
Position
121122..124721
Genome browser
AA seq
1199 aa
AA seq
DB search
MLDVNKFEYMKIGLASPEKIRSWSYGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM
SPRALEEVIYFASYVVTDPGDTPLEKKQLLSEKEYRAYREKYGQSFQASMGAEAIKKLLQ
DIDLDKEVAALKEELKTAQGQRRARIIKRLEVLEAFRSSGNDPAWMVLDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPNIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKMYQCGLPKE
MALELFKPFVMKELVERGLAHNIKSAKRKIERVHPEVWDVLEDVIKEHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTMEREGAIGEGMVFKDTDEALLAYHNGYVHLHSRIAIH
AGSLKNETFTEEQNNKLLLTTVGKLIFNEILPNSFPYINEPTTENIEGRTPDKYFLDKGV
NVREEIRKRELVPPFKKKVLGQIIAEVFKRFKITETSKMLDRMKDLGFQYSTKAGITIGV
ADIVVLPEKQEILDEAQAKVDTVLKQFRRGLITDEERYERVISIWSAAKDKIQDRLMKSL
DKRNPIFMMSDSGARGNASNFTQLAGMRGLMANPAGRIIELPIKSSFREGLTVLEYFIST
HGARKGLADTALKTADSGYLTRRLVDVAQDVIVREEDCGTDRGILARALTDGTEVVVKLE
ERLVGRYAHKTVRHPETGEVIVRKDEMITEDIANEIIKAGITEVWIRSVFACNTRHGVCK
KCYGRNMATGMDVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRVQELF
EARNPKGQAVISEIDGTVISINETRDNQYEIVVQSEVETRTYVAPYNARLKVEEGQRVER
GQELTEGSVDPKQLLRVRDITSVQEYLLREVQKVYRMQGVEISDKHIEVMVRQMLRKVRV
IDAGDTDVLPGTLLDVHQFTDVNAKALREGKRPATARQVLLGITKASLETDSFLSAASFQ
ETTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTGMARYRKVKPAVKKETAGDTVSSK
NT seq
3600 nt
NT seq
+upstream
nt +downstream
nt
ttgctagatgtcaataagtttgagtacatgaaaattgggctcgcttccccggagaaaatt
cgttcttggtcgtatggcgaagtcaaaaagccggagacaatcaactatcggacgttaaag
ccggaaaaagacggcttgttttgcgagcgcattttcggtccgacgaaagactgggaatgc
cattgcggcaaatataaacgcgttcgctacaaaggcgtcgtctgcgaccgctgcggcgtc
gaagtgacgcgctcgaaagtccgccgcgaacggatgggccatatcgagctggctgccccg
gtttcgcacatctggtatttcaaaggcatcccgagccggatgggattggttcttgacatg
tcgccgcgggcgctcgaagaggtcatttattttgcatcctatgtcgtcactgacccgggt
gatacgccgcttgagaaaaagcaactgttgtcggaaaaggaataccgcgcctatcgcgag
aagtacggtcaatcgttccaagcgtcgatgggggcggaggcgatcaaaaagctgctccaa
gacattgatttggataaagaggtggccgcgctgaaagaagagctgaaaacggcgcaaggg
caacggcgcgcccgcatcattaagcggcttgaagtgcttgaagcgttccgcagttcaggg
aacgacccggcatggatggtgcttgatgtactgccggtcattccgccggagttgcgcccg
atggttcagcttgacggcgggcggtttgcaacatcggatttgaacgatttgtaccgccgc
gtcatcaaccgtaacaaccggctgaaacggctgcttgatctcggtgcgccgaacattatc
gtccaaaatgagaagcggatgctgcaagaggcggttgatgctttgatcgataacggccgc
cgcggccgtccggtgaccggtccggggaaccgtccgttaaaatcgctttctcatatgctg
aaagggaagcaagggcgcttccggcaaaacttgctcggcaaacgcgttgattattccggc
cgctccgtcatcgtcgtcggcccaaacttaaaaatgtatcaatgcgggctgccgaaagaa
atggcgctagagttgttcaagccgttcgtcatgaaggagcttgtggagcgggggttggcg
cataacattaaaagcgcgaaacggaaaatcgagcgcgtccatccggaagtgtgggatgtg
cttgaagatgtcatcaaagaacatccggtgctgttaaaccgcgctccgacgctgcaccgt
ctcggcattcaggcgtttgaaccaacgcttgtggaagggcgggcgatccgtcttcatccg
cttgtttgcacggcgtacaacgctgactttgacggcgaccaaatggcggtgcacgtgccg
ctgtcggctgaggcgcaagccgaagcgcgcttgttgatgttggcggcgcaaaacattttg
aacccgaaagacgggaagccggtcgtgacaccatcacaagacatggtgttgggcaactac
tacttgacgatggagcgcgagggagccatcggcgaaggcatggtgttcaaagacacggac
gaggcgctgcttgcttaccataacggctacgtccatctccattcgcgcatcgccattcat
gccggttcgctgaaaaacgaaacgtttaccgaagagcaaaacaacaagctgctcttaacg
accgtcggaaagctcattttcaacgaaattttgccgaattcgttcccgtacatcaacgag
ccgacgacggaaaacattgaagggcggacgccggacaagtacttccttgacaaaggggtc
aacgtgcgcgaagaaattcgcaagcgcgaactcgtgccgccgtttaagaaaaaagtgctc
gggcaaattatcgctgaagtgttcaaacggttcaaaatcaccgaaacatcgaagatgctc
gaccgcatgaaagaccttggcttccaatattcgacgaaggccggcatcacgatcggcgtg
gccgatatcgtcgtcctgccggaaaaacaagaaattttggatgaagcgcaagcgaaagtc
gatacggttttgaagcagttccgccgcggcttaattacggacgaagagcggtacgagcgc
gtcatctccatctggagcgcggcgaaagacaaaattcaagaccggttgatgaagtcgctt
gataaacgcaatccgatctttatgatgagcgattccggagcgcgcgggaacgcgtcgaac
tttacgcagcttgcggggatgcgtggtttgatggccaacccggccggccggatcattgag
ctgccgatcaagtcgtcgttccgcgaaggcttgacggtattggaatactttatctcgacg
cacggcgcgcgaaaaggattggcggatacggcgctcaaaacggccgactcaggctatctt
acgcgccgccttgtcgacgtggcccaagacgtcatcgtccgcgaagaagattgcggcacc
gaccgcggcattttggcgcgggcgctgacggatggcacggaagttgtcgtcaagcttgaa
gagcggcttgtcggccgctatgcgcacaaaacggtgcgccatccggaaacgggcgaagtg
atcgtccgcaaagacgagatgatcaccgaagatatcgccaatgagatcattaaagccggc
attacggaagtatggattcgctccgtattcgcctgcaacacgcgccatggcgtctgcaaa
aaatgttacggccgcaacatggcgaccggcatggacgtcgaagttggcgaagccgtcggc
attatcgccgctcagtcgatcggcgagccgggcacgcagctgacaatgcggacgttccat
acaggcggcgtcgccggcgacgatatcactcaaggtttgccacgggtgcaagagctgttt
gaagcgcgcaacccgaaagggcaagcggtcatttctgaaatcgacggcacggttatttcg
attaatgaaacgcgcgacaaccaatatgaaatcgtcgtgcaaagcgaggtcgaaacgcgt
acgtatgtagcgccgtacaacgcgcggctgaaagtcgaagaaggtcagcgcgtcgaacga
ggccaagagctgacagaaggctcggtcgacccgaaacagttgttgcgcgtgcgcgatatt
acatccgttcaagagtacttgcttcgtgaagtgcaaaaagtgtaccggatgcaaggggtg
gagatcagcgacaagcatatcgaggtcatggtgcggcaaatgctgcgcaaagtgcgcgtc
atcgatgccggcgacaccgatgtgctgccgggtacgcttttggatgtccaccagtttacg
gatgtcaacgccaaagctcttcgcgaagggaaacggccggcaacggcccgccaggtgttg
ctcggcatcacgaaagcgtcgcttgagacggattcattcttgtctgctgcttcgttccaa
gaaacgacgcgcgtcttgaccgatgcagcgatcaaaggaaaacgtgatgaattgcttggc
ttaaaagaaaacgtcattatcggcaaactcgtcccggctggaaccggtatggcccgctac
cggaaagtgaagccggccgtcaaaaaggaaacggctggcgacacggtgtcgtccaaataa
DBGET
integrated database retrieval system
