Geobacillus sp. C56-T3: GC56T3_0206
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Entry
GC56T3_0206 CDS
T01245
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
gct
Geobacillus sp. C56-T3
Pathway
gct03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gct00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GC56T3_0206
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gct03019
]
GC56T3_0206
03009 Ribosome biogenesis [BR:
gct03009
]
GC56T3_0206
Enzymes [BR:
gct01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GC56T3_0206
Messenger RNA biogenesis [BR:
gct03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GC56T3_0206
Ribosome biogenesis [BR:
gct03009
]
Prokaryotic type
rRNA helicases
GC56T3_0206
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_19
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
ADI25275
LinkDB
All DBs
Position
230859..232262
Genome browser
AA seq
467 aa
AA seq
DB search
MTTFQELGLSQEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPI
VEKVDVKNGAIQALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQIRALKKH
PHVIVGTPGRIIDHINRGTLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHVPAERQTLL
FSATMPDPIRRIAERFMNEPELVKVKAKEMTVPNIQQYYLEVHEKKKFDILTRLLDIQAP
ELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGAIEILVATDVA
ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHHIERTTK
RKMERMKPPTLDEALEGQQRIAIEKLLNVVETENLSFYKRAAEELLEEHDSVTIVAACLK
MLTREPDTTPVQLTEEPPLAVKREKKRGGRPDGSARSRTKKRRITAH
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
ttgacgacatttcaagaattaggattaagccaagaagtgatgaaagcgatcgagcggatg
gggtttgaagagacgactccgattcaagcaaagacgattccgctcagtctgcaaaataaa
gacgtaatcggtcaagcgcaaaccggaacggggaaaacggcggcgtttggcattccgatc
gtagaaaaagtggatgtgaaaaacggcgccattcaggcgcttgtggtcgcgccgacgcgt
gagctcgccatccaagtatcagaagagctgtacaaaatcggcgccgtcaagcgcgtgcgc
gttttgccgatttacggcggtcaagatatcgagcggcaaatccgtgctttgaaaaaacat
ccgcacgtgatcgtcgggacgccgggccgtattatcgaccatatcaaccgcgggacgctc
cgccttgagcatgtgcatacggtcgttctcgatgaggcggatgaaatgctcaatatgggc
tttatcgaagatattgaggcgattttaagccatgtgccggccgagcggcagacgttgctg
ttctcggcgacgatgccggatccgattcgccgcattgccgagcgcttcatgaacgagccg
gaacttgtcaaagtgaaggcaaaggaaatgaccgtgccgaacattcaacagtactactta
gaagtgcacgagaaaaagaaatttgacattttgacgcggcttcttgatattcaggcgccg
gagctcgcgatcgtgttcggccgcacgaagcgtcgtgtcgatgagctggcggaggcgctc
aacttgcgaggctatgcagcggaaggcattcacggtgatttaagccaagcgaaacggctg
tcggtgctgcgcaagtttaaggaaggtgcgattgaaattttagtggcgacggatgttgcg
gcgcgcggcttggatatttccggcgtaacgcacgtgtacaactttgatattccgcaagac
ccggaaagctatgtccaccggattgggcgcaccgggcgcgccggcaagacaggggtggcg
atgacgtttgtcactccaagggagatcggccagcttcaccatattgagcggacgacgaag
cggaaaatggagcggatgaagccgccgacacttgatgaggcgctcgaaggccaacagcgt
atcgctatcgaaaagcttctcaacgtcgtggagaccgaaaacctgtcattttacaaacgg
gcagcggaagaattgcttgaagagcacgattcggtaacgattgtcgctgcctgcttgaaa
atgttgacgcgcgagccggatacgacgccggtgcaattgacggaagagccgcctttagcg
gtcaagcgggagaaaaaacggggcggccgcccggacggctcagcccgcagccggacgaag
aaacggcggattacggcgcattaa
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