Geobacillus sp. C56-T3: GC56T3_1258
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Entry
GC56T3_1258 CDS
T01245
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
gct
Geobacillus sp. C56-T3
Pathway
gct03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gct00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GC56T3_1258
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gct03019
]
GC56T3_1258
03400 DNA repair and recombination proteins [BR:
gct03400
]
GC56T3_1258
Enzymes [BR:
gct01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GC56T3_1258
Messenger RNA biogenesis [BR:
gct03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GC56T3_1258
DNA repair and recombination proteins [BR:
gct03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
GC56T3_1258
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
ADI26285
LinkDB
All DBs
Position
1314035..1315558
Genome browser
AA seq
507 aa
AA seq
DB search
MDELTKTLRMKFGHASFRPGQREVAEDVLAGRDVLAMLPTGSGKSLCYQLPAYLLQGSVL
IVSPLVSLMEDQVEQLRRRGEKRVIAFHSLLDAEEKWQALASLAEFRFIYASPEMLQSAK
FLTALRRVCISLFVVDEAHCISQWGYDFRPDFLKLGEIRRALGAPPCLALTATAPPEVQE
DIIRTLGMDGARRHIHSVDRPNIALCVEHCSSTEDKAARLADYAKRLEGPGIIYFSSRQW
AEEMARRLEQCGAGRVAYYHAGMDGEQRLLVQQQFVYGQLDIVCCTSAFGMGVNKENVRF
VLHFHMPAQLEAYVQEIGRAGRDGAPSLAVLFYADGDRAMAQAVAEAELLSPRELREWCR
RLPEGAGWEAAMATLEAAGFTDVQKRLLAYFLEREQRAMPGWLTAEAKERLYGRMAAAIE
ARRRWKRKKLQEMDEWVHLSSCRRQALVRAFGEELTDQRNACCDRCGLSLDGYERAVRRP
EAAPVRHWREELWDMLFGGGRTNETAK
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
ttggacgagttgacgaaaacgttgcgcatgaagttcggacatgcttcattccgcccgggt
cagcgggaagtggcagaagatgtgcttgcagggcgcgacgtgctggcgatgctgccgacc
ggaagcggcaagtcgctttgctatcagctgccagcgtatttgcttcaaggcagtgtgctg
atcgtttcgccgcttgtgtcgctcatggaggaccaagtcgagcagttgcgccggcgcggg
gaaaagcgagtgattgcttttcacagcctgcttgatgccgaagaaaaatggcaggcgctc
gcttcgcttgcggagtttcgctttatttacgcgtcgccggagatgctgcagtcggcaaaa
tttttaacggcgcttcggcgcgtatgcatttcgctttttgtcgtcgatgaagcgcactgc
atttctcaatggggatatgactttcgcccggactttttaaagcttggggagatccggcgc
gcgctcggggccccgccgtgtttggcgttgacggcgacggcgccgcccgaggtgcaggag
gatattattcgcacgctcgggatggatggcgcccgccgccatattcattccgtcgatcgt
ccgaacatcgccttgtgcgtggagcattgttcatcaacggaggacaaagcggcgcgcttg
gccgattatgccaagcgtctcgaaggcccgggaatcatttatttttcgagccgtcaatgg
gcggaagagatggcgcgccggctcgaacagtgcggcgcggggcgggtcgcctattaccat
gccggcatggacggggagcaacggttgctcgtgcagcagcaatttgtctacggtcagctt
gacatcgtatgttgtacaagcgcattcggcatgggcgtgaacaaagaaaacgtccgattt
gtgcttcattttcatatgccggcccagctcgaggcgtatgtgcaggaaatcgggcgcgcg
gggcgtgacggagcgccaagccttgctgtgttattttatgcggacggcgatcgggccatg
gcccaggcggtggcggaggccgagctgttaagtccgcgcgagctgcgtgagtggtgtcgg
cggctgccggaaggagccggatgggaagcggcgatggcgacgctcgaggctgccggattc
accgacgtacaaaagcggctgttggcgtattttttagaacgggaacaacgggcgatgcct
ggttggctgacagcggaggcgaaagagcggctgtacggcaggatggcagccgccatcgag
gcgcggcggcgctggaagcggaaaaaactgcaggaaatggatgaatgggtgcacttgtct
tcgtgccggcgtcaagcgcttgtccgcgcgtttggcgaggagctgacggatcagcggaat
gcctgttgcgatcgctgcgggctttcgcttgacggctatgaacgagccgtccgccgtccg
gaggcggcgccggttcgccattggcgcgaggagttgtgggacatgctttttggcgggggg
cggacgaatgaaacggcaaagtga
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