Geobacillus sp. C56-T3: GC56T3_2519
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Entry
GC56T3_2519 CDS
T01245
Name
(GenBank) RNA-metabolising metallo-beta-lactamase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
gct
Geobacillus sp. C56-T3
Pathway
gct03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gct00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GC56T3_2519
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gct03019
]
GC56T3_2519
Messenger RNA biogenesis [BR:
gct03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GC56T3_2519
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
DUF4453
Motif
Other DBs
NCBI-ProteinID:
ADI27477
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Position
2662418..2664085
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AA seq
555 aa
AA seq
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MKLLTDQQVGVFALGGLGEIGKNTYGVQFQDEIIVIDAGIKFPEDELLGIDYVIPDYSYL
VKHADKVKGLFITHGHEDHIGGIPYLLRQVNIPIYGGKLALGLIRNKLEEHGLLRQAKLI
EIREDDVIRFQKTAVTFFRTTHSIPDSYGIVVKTPVGQIVHTGDFKFDFTPVGEPANLTK
MAEIGKEGVLCLLSDSTNSEIPHFTMSERRVGESIHDIFRKVEGRIIFATFASNIHRLQQ
VTEAAVANNRKIAVFGRSMEAAIEIGQDLGYIKCPKGTFVDANEINRLPANRVTILCTGS
QGEPMAALSRIANGTHRQIQIIPGDTVVFSSSPIPGNTVSVNRTINMLYRAGAEVIHGPL
NDIHTSGHGGQEEQKLMIRLMKPKYFMPIHGEYRMQKMHAKLAIDCGVPEENCFIMDNGE
VLGISDKEARIVGKIPSGSVYIDGSGVGDIGNIVLRDRRILSEEGLVIVVVSINMKEFKI
AAGPDIISRGFVYMRESGDLISEAQVLISKHLEKVLERKTNQWSEIKNEITETLAPFLYE
RTKRRPMILPIIMEI
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgttgacagaccagcaagttggcgtttttgccctcggcggactgggtgaaatc
ggaaaaaatacatacggcgtacaattccaagacgaaatcattgtcattgacgcaggcatt
aagtttccggaagatgagctgcttgggatcgactatgtcattccagactactcctattta
gtgaagcacgcggacaaagtgaaaggactgttcatcacccacgggcacgaagaccatatc
ggcggcattccgtatttgctccggcaggtgaacatcccgatttacggcggcaaattagcg
cttgggctgattcgcaataagcttgaggaacatggattgttgcgccaagcgaaactcatt
gagattcgcgaagacgatgtcatccgcttccaaaaaacggccgtcacctttttccggacg
acacacagcattccggacagctacggtattgttgtgaaaacgccagtcgggcaaatcgtt
cacactggggattttaaattcgactttacgccggtcggcgagccggccaatttgacaaaa
atggccgaaattgggaaagaaggagttctttgcctgctgtcggacagcacgaacagcgag
atcccgcattttacgatgtcggagcggcgcgtcggtgaaagcattcacgacattttccgc
aaggtggaaggacgcatcattttcgccacatttgcatcaaacatccaccgtctccaacag
gtgacggaagcagccgtcgccaacaaccgaaaaatcgctgtcttcggtcgaagcatggaa
gcggcgattgagatcggacaagacctcggctatatcaaatgtccgaaaggcacgttcgtc
gacgcgaacgaaatcaaccgcctgccggccaaccgggtgacgattttatgcaccggcagc
caaggggagccgatggccgccttgtcgcgcatcgccaacggcacgcaccggcaaattcaa
atcatcccaggcgacacggtcgtcttttcctcatcgccgattccgggcaacacggtgagc
gtcaaccggacaatcaacatgctgtaccgcgccggcgcagaagtcatccatggcccgctc
aacgacatccatacgtccggccacggtgggcaggaagaacaaaaattgatgatccggctg
atgaagccgaaatatttcatgccgatccacggcgaataccgcatgcaaaaaatgcacgcc
aagctcgccatcgactgcggcgtgccggaggaaaactgctttattatggacaacggcgaa
gtgcttggcatcagcgacaaagaagcgcgcatcgtcggcaagatcccgtccggctccgtc
tacatcgacggcagcggtgtcggcgacatcggcaacatcgtcttgcgcgaccgccgcatt
ttgtctgaggaagggctcgtgattgtcgtcgtcagcatcaacatgaaagagttcaaaatc
gccgccggcccggacattatttctcgcggcttcgtctatatgcgtgagtcaggtgactta
atcagcgaagcgcaagtgttgatctccaagcatctcgaaaaagtgctggaacggaaaacg
aaccaatggtcggagatcaaaaacgaaattacggaaacgctcgctccgttcttgtacgag
cggacgaaacggcggccaatgattttgccgatcatcatggaaatctaa
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