Geobacillus sp. C56-T3: GC56T3_2836
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Entry
GC56T3_2836 CDS
T01245
Name
(GenBank) GAF modulated sigma54 specific transcriptional regulator, Fis family
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
gct
Geobacillus sp. C56-T3
Brite
KEGG Orthology (KO) [BR:
gct00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gct03000
]
GC56T3_2836
Transcription factors [BR:
gct03000
]
Prokaryotic type
Helix-turn-helix
Other families
GC56T3_2836
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
AAA_lid_14
Sigma54_activ_2
HTH_8
AAA_5
GAF
PAS_4
Mg_chelatase
PAS
AAA_2
AAA
PAS_8
HTH_23
PAS_9
CodY
PAS_7
MCM
HTH_30
HTH_28
HTH_29
AAA_22
HTH_50
HTH_psq
HTH_7
AAA_3
HTH_17
AAA_16
nSTAND3
HTH_1
AAA_7
DUF815
NUMOD1
Motif
Other DBs
NCBI-ProteinID:
ADI27779
LinkDB
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Position
complement(2974878..2976809)
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AA seq
643 aa
AA seq
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MAVTSEQVKIMWEKFVFHNELDPDLPPMIRDSWLRSKKAMVDPFRTYGWIKEIDNEKYRS
LIDWSLPLMEGLYSIVKGSGFLVILCNENGQLLLSIGDREPLARAEEIGFIAGADWSEQV
MGTNAIGTSIAIDRPIQVFAEEHYTKICQSWTCSAAPIHDPDGRIIGVLNMSGPYEKVHS
HTLGMVVSAVKAIEYQLKLHENAEKNVMMQRFLEATTNNMKEGILIIDRDGKIVKANNQL
KKLFRIPQLQLEEKKLDDLFNDPSICSNHPLHLQNQELHLSVKPSNAVHHVLVDKIPIYE
KKERIGSMIIVKEIEKVRQFVNHLSGNQAKITFADMIGQHPCFIEKMNEARLAAATDSNV
LILGESGTGKEMVAQAIHNESKRRNKPFIAINCGGIPRDLLGSELFGYVDGAFTGAKKGG
SAGKFELANGGTLFLDEIGEMSLEMQVLLLRVIQEKEVMRIGGHKVIPVDVRIIAATNKD
LRQEVQKGSFREDLFFRLNVMPIVLPPLRKRKEDIPLLVRHFIERLAHKRNKPFPEIRSD
FLEALMQYDWPGNIRELQNMIERVLNQCTKPVLTAADLPEEIFRPLRLPQVRENVDISRN
EIKKQSIIEALKQCNGNISKAARYLGISRSTFYRQMDKWNIRY
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atggccgtgaccagcgagcaagtgaaaatcatgtgggaaaagttcgtatttcataacgag
ctcgatcccgatttgccgcccatgattcgagactcttggcttcggtcgaaaaaagcgatg
gttgatccgtttcggacgtacgggtggattaaagaaatcgacaatgaaaagtaccgctcc
ttgatcgattggtcattgccgttaatggaagggttgtattcgattgtcaaaggatctgga
tttttggtgatcctgtgcaatgaaaacggacagttgcttttgtcgattggcgatcgcgag
cctttagcgagggcggaagaaatcggatttatcgcgggggcggactggagcgagcaagtg
atggggaccaacgccattggcacatcgatcgccattgatcgtccgattcaagtgtttgct
gaggaacattacacgaaaatatgccagtcatggacgtgttccgctgcccccatccatgat
cccgacggccgaatcattggtgtattgaatatgtcaggaccctatgaaaaagtgcactct
catacgctaggaatggttgtatcagccgtaaaggcgattgagtaccaactaaaattacat
gagaatgctgaaaaaaacgtgatgatgcaacggtttttggaagcgacaacgaacaatatg
aaagaaggtattttaatcatcgatcgcgatgggaagatcgtaaaggcgaacaaccagtta
aaaaagctgttccgtataccacaactgcaactggaagagaaaaagctcgacgatcttttc
aatgatccctctatctgttcgaaccacccgcttcatttgcaaaatcaagagctgcatcta
agcgtcaagccttcaaacgcggtgcaccatgtgttagttgacaagattccaatttacgag
aaaaaagaacgaatcggatcgatgatcattgtaaaagaaattgaaaaggtacgccagttt
gtcaaccacctatcgggaaaccaagcgaaaatcacgtttgcggatatgatcgggcaacac
ccgtgtttcattgagaaaatgaacgaagcgaggctcgccgcagcgacagattccaacgtg
ttaatattaggggaaagcggaacaggaaaagagatggtggctcaggcgattcataatgag
agcaagcggagaaacaaaccgtttattgccattaactgtggaggcataccgcgtgatctc
cttggcagtgagttgttcggatatgtggacggggcattcacaggagcgaaaaaaggggga
agcgccggaaagtttgagcttgccaatgggggaacgctttttttggatgagattggcgaa
atgtccttggaaatgcaagtgttgcttttgcgcgttattcaagaaaaggaagtgatgaga
attggcgggcacaaagtgatccctgttgatgtaagaatcatcgcagcgaccaacaaagac
cttcgtcaggaagtgcaaaaaggcagctttcgcgaagacttgtttttccggttgaatgtc
atgccgattgttctcccgccgcttcggaaaagaaaagaagatattccgcttctcgtccgt
cattttattgaaagactggctcacaaacgaaataaaccgtttcctgagatacggtccgat
ttcttagaggcgcttatgcaatacgattggccaggaaatattcgcgagttgcaaaatatg
atcgagcgggtgctgaatcagtgcacaaaaccggtattgacagcggctgatttgccggaa
gaaatctttcggcctcttcgcttgcctcaagttagggagaacgtagacatctcccgaaat
gagataaaaaagcaatccatcatcgaggcgttaaagcagtgcaacggcaacatttccaaa
gctgcccgttatttaggcatatcgagaagcacattttaccggcaaatggataaatggaat
attcggtattga
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