Gloeomargaritales cyanobacterium VI4D9: LQF76_00885
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Entry
LQF76_00885 CDS
T08937
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
gcy
Gloeomargaritales cyanobacterium VI4D9
Pathway
gcy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gcy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LQF76_00885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gcy03019
]
LQF76_00885
03016 Transfer RNA biogenesis [BR:
gcy03016
]
LQF76_00885
Enzymes [BR:
gcy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
LQF76_00885
Messenger RNA biogenesis [BR:
gcy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LQF76_00885
Transfer RNA biogenesis [BR:
gcy03016
]
Prokaryotic type
tRNA degradation factors
LQF76_00885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
SLS1_KH2
KH_2
aRib
KhpA-B_KH
Motif
Other DBs
NCBI-ProteinID:
WAS05477
LinkDB
All DBs
Position
204509..206638
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AA seq
709 aa
AA seq
DB search
MQKSITFDGREIRLRLGELAPQAGGSVLVECGDTAVLVTATQGTAREGVDFLPLMVEYEE
RLYAAGRIPGGFLRREGRPPEKVILTSRLIDRPLRPLIPDWLREDMQVVATTLSLDEDVP
PDILAALGASLAVATAGIPFLGPMAAVRVGLLGDEFIINPTYAEVEAGELDLVVAGSPQG
VIMVECRANQLPEADMIEAIDFGHEAIQELIRAQQELLAELGVTLTVPPPPEPPADLVRL
LEETAAEGIQAVLDQTIADKQLRNQALEAVKAQVMAALEALPEDDPRRVAGTPKTVEALF
KSLTKKLMRRHVLEKGIRVDGRKVDEVRPIHCEVGVLPRRVHGSAVFQRGSTQVLSAVTL
GTPGDAQDLADDLHPEDEKRYLHHYNFPPYSVGEAKPMRAPSRREIGHGALAERALLPVL
PSKSDFPYVLRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPLLRPVSGVAMGLIKEGDQV
QVLTDIQDIEDFLGDMDFKVAGTDAGITALQMDMKITGLDVPTLGKAIKQARAGRLFILE
KMLATLAAPRSQLSPYAPRLLTLKIDQELIGAVIGPGGKTIRGITEETGAKIDIEDDGTV
TISAADEERAQKAYRLIDGMTRRLNEGDVYTGRVTRIIPIGAFVEILPGKEGMIHISQLA
EHRVGKVEDVVSVGDEVIVRVREIDSRGRINLTRLGIHPDEAATARQRT
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaagtcaattacgtttgacggacgggaaatccgtctgcgcctgggagaactggct
ccgcaggcgggtggttcggtattggtcgagtgtggcgatacggcggtattggtgaccgct
acccaaggcacggcgcgggagggggtggattttctccccttgatggtggaatatgaggag
cggttgtacgccgctgggcggattccgggggggtttttgcgacgggagggtcgtcccccg
gaaaaggtgattttgaccagccgcttgattgaccgtcccctgcgtcccctaatcccggat
tggttgcgggaggatatgcaggtggtggccacgaccctatccctggatgaagacgtaccc
ccggatattttggccgccctgggggcttccttggcggtggcaacggcggggattcccttc
ctggggccgatggccgccgtgcgggtgggactcctgggggatgaatttatcatcaatccc
acctatgcggaagtggaagcgggggaattggatctggtggtcgccgggtcgccccagggg
gtgatcatggtggaatgccgggcgaatcaattgccggaggcggacatgatcgaggcgatt
gattttgggcatgaggcgatccaggagttgatccgggcgcaacaggaacttttggcggaa
ttgggggtgaccttgaccgtgcctccccccccggaacccccggcggatttggtgcgtttg
ctggaggaaacggcggcagaggggattcaggcggttttggatcagaccattgcggacaaa
caactgcggaatcaagccctagaggcggtgaaagcccaggtgatggcggcgctggaagcc
ttgcccgaagatgacccccggcgggtggcgggcacccccaaaaccgtggaagctctgttc
aaatccctgaccaagaaactcatgcgccgccatgtgctggagaaaggcatccgggtggac
ggtcggaaggtggatgaggtgcgcccgattcactgtgaggtgggggtattgccccggcgg
gtgcatgggtcggcggtcttccaacggggttcaacccaggtgctttcggcggtgacgttg
gggacgccgggggatgcccaggatttggcggatgacctgcacccggaggacgaaaaacgc
tacctgcaccattacaattttccgccctattccgtgggggaagccaaaccgatgcgggca
ccgtcgcgccgggagattgggcatggggctttggcggagcgggcgttactgccggtcttg
cccagcaaaagcgactttccctacgtcctgcgggtggtgtcggaggttctatcttctaat
ggttccacctcgatgggttccgtgtgtggttccaccctggcgttgatggatgcgggggtg
cccctcctgcgcccggtgagtggggtggcgatgggcttgatcaaagagggagaccaggtg
caggtgctgacggacattcaggacatcgaggacttcctgggggacatggacttcaaggtg
gcgggtacggatgcggggattaccgccctgcaaatggatatgaaaatcaccggtctggat
gtgcccaccctggggaaggcgatcaagcaggctcgggcgggcaggttgtttatcctggag
aaaatgctggcgaccctggcggcgccccgttcccaactgtccccctatgccccgcgcctg
ttgaccctcaagattgaccaggagttgatcggggcggtgattggacccggcggcaaaacc
atccgggggattacggaagaaaccggtgccaagatcgacatcgaggatgatggtacggtg
accatcagtgccgccgatgaggagcgggcacaaaaagcctaccggctgattgacggcatg
acccgccgcttgaatgaaggggatgtctatacgggacgggtgacccggattatccccatc
ggggcgtttgtggaaatcctgccggggaaagaggggatgatccatatttcccaattagcc
gagcatcgggtcggcaaggtggaggacgtggtttccgtcggggacgaggtgattgtgcgg
gtgcgggaaattgacagccgggggcggatcaacctgacccgtttggggattcacccggac
gaggccgccactgcccgccagcgaacgtaa
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