Gloeomargaritales cyanobacterium VI4D9: LQF76_01910
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Entry
LQF76_01910 CDS
T08937
Name
(GenBank) ribonuclease R
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
gcy
Gloeomargaritales cyanobacterium VI4D9
Brite
KEGG Orthology (KO) [BR:
gcy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gcy03016
]
LQF76_01910
Enzymes [BR:
gcy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LQF76_01910
Transfer RNA biogenesis [BR:
gcy03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
LQF76_01910
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RNB
CSD_RNase_II
HTH_RNase_II
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
WAS05671
LinkDB
All DBs
Position
complement(427148..429139)
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AA seq
663 aa
AA seq
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MDKGTLIEFQTDGGTRLGVIQRPDGKKNWIASDAQGRSYSLHPRQISFTVPGRTYLAEDI
PEFEQTARAYQDPDALELAWELLSPDHRLTNPQELAQLIFNQTDPPICYAAHRLLREDRI
FFKQKGDYYEPRSPQQVQDIRHQLEKAAQKQEEVSTFYSKIQQALQGETVTWSGKERHLL
EQLEQFVILEGQESRAVAELLTHLERPVTPAGAQELLVALGWWHPHENLALRRSSLPTTF
PPAVLEAVAMRIENPPTDLDAPWRVDLTALKVYTIDDISTKEIDDGLSWELLPDGRERLW
IHIADPGRWLTPGDILDQEARRRSTSVYLPTGVIPMFPEVLATGPMSLQQGQTCCALSFG
VILEPSGAIAEFQITASWVRPTYRLTYEDVDELLQLQIERERELLHLSEWAERRLHWRLA
QGAIQIQMPEAEIKVTDDQVEVRVQQPSPARFMVAEMMILAGEVTARYAQNAGLAMPFRS
QAQPELPPEEELLQLPGGPVRTCAIRRCLTKSEVSITPGRHASLGLEAYVQATSPIRRYG
DLLAHWQIKAHLRGEAPVFAAAELQSILQSVTAATQEASLVERQTNRYWSLEYLRRHGQG
VWIALVLRWLREDMDLVLVLLEELGLELGMRVQRPVKLGEHLQVQVTHVDPYRDVIHLRE
VTP
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
gtggacaagggcaccttaatcgaatttcagaccgacggcggcacccgcttgggggtgatc
caacgcccggatggcaaaaaaaactggatcgccagcgatgcccaggggcgcagttacagc
ctgcatccccgccaaatcagttttaccgtgccggggcgcacctacctcgccgaggatatt
cccgagtttgagcagaccgcccgtgcctaccaggacccggatgccctggaattagcctgg
gaattgctcagccccgaccaccggctcaccaacccccaggaactggcgcaattaattttt
aaccaaaccgacccgcccatctgctacgccgcccaccgcctgctgcgtgaggaccggatt
tttttcaaacaaaagggggactactacgaaccccgctccccccaacaggtgcaggacatt
cgccatcagttggaaaaagcggcgcaaaagcaggaagaagttagtacattttacagcaaa
attcagcaggcactccagggggaaaccgtcacctggtctgggaaagaacggcatctgctg
gaacaattggaacaatttgttatcctagaggggcaggagtcccgggcggtggcggagttg
ctgacccatctggagcggccggtgacgccagcgggggcgcaggaattactcgtggctttg
ggttggtggcacccccacgaaaacctagcactgcggcgcagttccctgcccaccaccttt
cccccggctgttttggaggcggttgccatgcgtattgaaaacccgcccaccgacctggat
gccccttggcgggtggatttgaccgccctgaaggtctataccattgacgatattagcacc
aaagaaattgatgacgggttgagttgggagctgttgcccgatgggcgggagcggttgtgg
attcacattgccgacccagggcggtggctgaccccgggggacattttggaccaggaagcc
cgccgccgcagtaccagcgtgtatttgcccaccggggtaattcccatgttcccggaggtt
ttggcgactggacccatgagtttacagcaggggcagacctgttgcgccctcagtttcggg
gtgattttagagccgtccggggcaattgccgagtttcagatcaccgccagttgggtgcgc
cccacctaccgcctcacctatgaggatgtggatgaattgctccagttgcagattgagcgg
gaacgggaactgctacacctatccgaatgggcggaacggcggttacattggcggttggca
caaggggcgatccagattcagatgccggaggcggagatcaaagttaccgatgaccaggtg
gaggtgcgggtgcaacagccttccccagcccggtttatggttgcagaaatgatgatcctg
gcgggggaggtgacggctcgctacgcccaaaatgccgggttagccatgccctttcgttcc
caagcccagccggaattgcccccggaggaggaattgttgcaactgccgggggggccggtg
cggacctgtgcgattcgccgctgtttgaccaaaagcgaggtgagcattacccccggtcgt
catgccagtttgggcttagaagcctatgtgcaagccacctccccgattcgccgctatggg
gatttgctcgcccattggcagatcaaggcgcacctgcggggggaagccccggtatttgcg
gcggcggaattgcagagcattctccagagtgtgacggcggctacccaggaggcgagtctg
gtggaacggcaaaccaaccgctattggagtctggaatacctacgccgccacggccagggg
gtgtggatcgccctggtgttgcgctggttgcgggaggatatggacctggtgctggtgctg
ttggaagaactggggttggaattggggatgcgggtgcaacggccggtgaaattgggggaa
cacctccaggtgcaagtgacccacgtggatccctaccgggatgtgattcacctgcgggaa
gtgaccccctga
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