Gloeomargaritales cyanobacterium VI4D9: LQF76_11265
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Entry
LQF76_11265 CDS
T08937
Symbol
sigC
Name
(GenBank) RNA polymerase sigma factor SigC
KO
K03087
RNA polymerase nonessential primary-like sigma factor
Organism
gcy
Gloeomargaritales cyanobacterium VI4D9
Brite
KEGG Orthology (KO) [BR:
gcy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gcy03021
]
LQF76_11265 (sigC)
Transcription machinery [BR:
gcy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LQF76_11265 (sigC)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
LexA_DNA_bind
Sigma70_r4_2
HTH_28
3A
GerE
Motif
Other DBs
NCBI-ProteinID:
WAS04594
LinkDB
All DBs
Position
complement(2380146..2381300)
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AA seq
384 aa
AA seq
DB search
MSLDQVELSEVQSVSRGETQDLVRLYLQEIGRVELLSRDQEVAEAQRVQRYVQLLEFAQR
VAQGNHTATPAQQALMQEYLQLCQLRDQLTAQYGHRPTPQQWAQAAGMTAATLKQTLTQA
RSLWAQLAGLTPEALGRIEQEGLRAKAHMIEANLRLVVSVAKKYQNRGLELLDLVQEGTL
GLERAVDKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHVIEKLNKLKKAQRQA
AQAQGHTPSLREIAQEMDMTPEQVRELLACIPRAVSLETRVGRERDTELGELLEAAEVSP
EEQLISESLHQDLLELMNDLTLRERDVITMRYGLSDGHVYSLAEIGRALNLSRERVRQIE
SKAMQKLRQPKRRNRMRGYLDSLN
NT seq
1155 nt
NT seq
+upstream
nt +downstream
nt
atgagcctagaccaggtagaactcagtgaagtgcaatccgtttcccgcggcgaaacgcag
gatttagtccggctgtatctacaagaaattggccgggtcgaactcctgagtcgggatcag
gaagtcgccgaagcccagcgggtgcaacgatatgtgcaattgctggaatttgcccagagg
gtggcacagggcaaccataccgctaccccagcgcaacaggcactcatgcaggagtatttg
caactctgccaactgcgggatcaactcaccgcccagtacggccatcgtcccaccccgcaa
caatgggcacaggcggcgggaatgactgcggctaccctcaagcaaaccctgacccaggcg
cgcagtctgtgggcgcagttggcgggcttgacccccgaagccttgggacgaattgaacag
gaagggttacgggcaaaagcccacatgattgaggccaatttgcgcctagtggtctcagtg
gcgaaaaaataccaaaaccggggcttagaactgttggatttggtgcaggaaggcacccta
gggctagagcgggcggtggataagtttgacccgaccaaagggtatcgttttagcacctat
gcgtattggtggatacgccaggggattacccgtgccattgccacccagtcccgcaccatc
cgtctgccggtacacgtgattgaaaagttaaataaattaaagaaagcccaacggcaagcc
gcccaagcccaggggcacacccccagcctgcgggaaattgcccaggagatggacatgacc
ccggaacaggtacgggaattgctggcctgcattccccgggcagtgtccctggaaacccgg
gtgggacgggaacgggatacggagttgggggaattactagaagccgccgaggtatccccg
gaagaacaattgatcagcgaatccctgcaccaggacctattggaattgatgaatgattta
accctgcgggagcgggatgtcatcaccatgcgctacggtctgagtgatggtcatgtgtat
tccctggcggaaattggtcgtgccttgaatttatcccgggagcgggtgcggcaaattgaa
tccaaagcgatgcaaaaactacggcaaccgaaacggcgcaatcggatgcggggttattta
gactccctcaactga
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