Gluconacetobacter diazotrophicus PA1 5 (Brazil): GDI0965
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Entry
GDI0965 CDS
T00631
Symbol
recD
Name
(GenBank) putative exodeoxyribonuclease V alpha chain
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
gdi
Gluconacetobacter diazotrophicus PA1 5 (Brazil)
Pathway
gdi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gdi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
GDI0965 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gdi03400
]
GDI0965 (recD)
Enzymes [BR:
gdi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
GDI0965 (recD)
DNA repair and recombination proteins [BR:
gdi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
GDI0965 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
HHH_RecD2
OB_YrrC
SH3_13
UvrD_C_2
HHH_5
Viral_helicase1
AAA_11
HHH_2
PIF1
Helicase_RecD
AAA_16
TraI_hel_assoc_N
nSTAND3
NTPase_1
RsgA_GTPase
AAA_29
SLFN-g3_helicase
AAA_22
NPHP3_N
MeaB
DEAD
ABC_tran
UvrD-helicase
AAA_28
ATP_bind_1
AAA
cobW
AAA_23
MMR_HSR1
NACHT
TsaE
T2SSE
Mg_chelatase
AAA_24
NB-ARC
ABC_ATPase
MobB
HHH
TrwB_AAD_bind
KTI12
Motif
Other DBs
NCBI-ProteinID:
CAP54908
UniProt:
A9HC74
LinkDB
All DBs
Position
complement(983509..985695)
Genome browser
AA seq
728 aa
AA seq
DB search
MSGRATDSSPTEVLAGLVERVTFHNAENGFCVLRVKVRGQRDLVTVVGHAAMISAGEFVQ
MSGRWFNDHTHGLQFKAEFLKASPPTTVEGIERYLGSGMIRGIGPVYAKKLVKAFGEAVF
DLIEQEPGRLREVTGIGPKRAERIVAGWADQKVIREIMLFLHSNGVGTSRAVRIFKTYGQ
DAVRLISENPYRLAKDIRGIGFKTADQIAQKMGIAPDAMIRVRAGISYALGEAMDEGHCG
LPVGELLTSTAELLEVAAPLIETALALELEAGDVIADSVGETGCIFLAGLYRAEQSIAER
LRACAVGRPPWPDIDAEKAMAWVEGKTGLALAPSQQKAVRLALGSKVLVITGGPGVGKTT
LVNAILKIVTAKGADVQLCAPTGRAAKRLSESTGLEGKTIHRLLETDPATGSFKRDDTNP
LTCDLLVVDEASMVDVLLMRSLLRALPDSAALLIVGDVDQLPSVGPGQVLADIINSDAVP
VVRLTEVFRQAAQSRIITNAHRINEGRMPELSAEEGSDFYFVEAAEPEIGLRKLLAVVKD
RIPARFGLDPVRDVQVLCPMNRGGLGARSLNIELQQALNPPGDVKVERFGWTYGPGDKVM
QIANDYDRDVFNGDLGVIDRIDIEEGELTVSFDGREVVYGFGELDELVLAYATTIHKSQG
SEYPGVVIPLVTQHYAMLERNLLYTGVTRGRKLVVLIGQKKALAIAVRNQGGRRRWSKLR
EWLAGGAT
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atgagcggacgcgccaccgactcttcgcccacggaagtgctggcgggactggtcgagcgg
gtgacgttccacaacgccgagaacggcttctgcgttctgcgggtgaaggtgcgggggcag
cgcgatctggtcactgttgtcggccatgccgccatgatttcggcgggcgagttcgtgcag
atgtcgggacgctggttcaacgaccacacccacggccttcagttcaaggccgagtttctc
aaggccagcccgccgaccacggtcgagggcatcgagcgttatcttggttcgggcatgatc
cggggcatcggccccgtctatgccaaaaagctggtgaaagcgttcggcgaggcggttttc
gacctgatcgagcaggagcccggcaggctgcgggaggtgacgggcatcggtcccaagcgc
gccgaacggatcgtcgctggctgggcggatcagaaggtgatccgcgagatcatgctgttc
ctgcacagcaacggcgtcggcacctcgcgggcagtccggatctttaagacctacgggcag
gatgcggtccgactgatcagcgagaacccctaccggcttgcgaaggacatccgggggatc
ggattcaagaccgctgaccagattgcccagaagatggggatcgcgcccgacgccatgatc
cgggtgagggcagggatctcctatgcgcttggcgaggccatggacgaagggcattgcggc
ctgccggtcggggaattgctgaccagcaccgccgaactgctggaggtagccgcccctctg
atcgagactgccctcgcgctggagctggaggcgggcgacgttattgccgacagcgtggga
gagacgggctgtatcttccttgctggtctctatcgcgcggagcagagcatcgccgagcgg
ttgcgcgcctgcgccgtcggtcgtccgccctggccggacatcgacgctgaaaaggccatg
gcctgggtggaaggcaagaccggactggctctggcgcctagccagcagaaggcggtgcgt
ctggctttgggtagcaaggtgctggtgattacgggtggtcccggcgtaggcaagaccacg
ctggtcaacgccattctcaagatcgtgacggccaagggcgccgacgtgcagctttgtgcg
ccgacgggtcgcgcagcgaagcgcctgtcggaaagcacggggctggagggcaagactatc
caccgcctgctggagacggatccggcgactggcagcttcaagcgggacgataccaacccg
ctgacctgcgatctgctggtcgtggacgaagccagcatggtggacgtgctgctgatgcgc
tccctgttgcgcgccttgcccgacagcgcagccttgttgatcgtcggcgatgtggaccag
ttgccgtcggtcgggccggggcaagtgctggccgacatcatcaactccgatgccgtacct
gtggtgcggctgaccgaggtgttccgccaggccgcgcagagccggatcatcaccaacgcg
caccggatcaatgagggcaggatgcccgaactgagcgcggaagagggatcggatttctac
ttcgtcgaggcggcagaaccggagatcgggctacgcaagctgctggccgtggtgaaggac
cgcatcccggcgcggttcgggctggaccctgttcgcgacgtgcaggtgctctgcccgatg
aaccggggcgggcttggggcgcggtcgctgaatatcgaattgcagcaggcgctgaacccg
ccaggcgacgtgaaggtcgagcggttcggctggacctatggtccgggtgacaaggtgatg
cagatcgccaacgattatgaccgggacgtcttcaacggagatcttggcgtcatcgacagg
atcgatattgaagaaggcgaactgacggtttcattcgatggacgggaggtcgtttacggc
ttcggcgagctggatgaactggtgctggcctacgcgacgaccattcacaagagccagggg
tcggaatacccgggggtggtgatcccattggtgacgcagcattacgccatgttggagcgg
aacctgctctataccggcgtgacacgggggcggaaactcgttgtcctgatcgggcagaag
aaggcgctggccattgctgtgcggaatcagggcgggagacggcggtggtcgaagctcagg
gaatggttggctggcggtgccacatga
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integrated database retrieval system
