Gluconacetobacter diazotrophicus PA1 5 (Brazil): GDI2306
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Entry
GDI2306 CDS
T00631
Symbol
dapF
Name
(GenBank) putative diaminopimelate epimerase
KO
K01778
diaminopimelate epimerase [EC:
5.1.1.7
]
Organism
gdi
Gluconacetobacter diazotrophicus PA1 5 (Brazil)
Pathway
gdi00300
Lysine biosynthesis
gdi00470
D-Amino acid metabolism
gdi01100
Metabolic pathways
gdi01110
Biosynthesis of secondary metabolites
gdi01120
Microbial metabolism in diverse environments
gdi01230
Biosynthesis of amino acids
Module
gdi_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
gdi00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
GDI2306 (dapF)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
GDI2306 (dapF)
Enzymes [BR:
gdi01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.7 diaminopimelate epimerase
GDI2306 (dapF)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DAP_epimerase
Pro_racemase
Motif
Other DBs
NCBI-ProteinID:
CAP56249
RhizoBase:
GDI2306
UniProt:
A9HM33
LinkDB
All DBs
Position
complement(2369511..2370347)
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AA seq
278 aa
AA seq
DB search
MTPFHKMHGLGNDFVVVDERAERYGLTPARIAALADRHRGIGCDQFVVLQPATRDGADVL
VRFFNADGTEAGACGNASRCVAALLWRQEGRRETVLQTRAGLLPARVDDAGVVTVDMGRP
ALDWRDVPLARAADTLHLPLAGDPAAASMGNPHATFFLDDMLDLDPVVAGPLLEHDPLFP
ERANIGFAHVRSRTELRLRVWERGSGLTLACGSGACAAVVNAVRRGLVERTCTVGMDGGA
LSVSWRAQDDPGEGGHVLMTGPATVSFVGTFDPEGYPS
NT seq
837 nt
NT seq
+upstream
nt +downstream
nt
atgaccccgttccacaagatgcacggcctgggcaacgatttcgtcgtggtggacgaacgc
gccgaacggtacggcctgacgccggcccgcatcgcggcgctggccgaccgccatcgcggg
atcggctgcgaccagttcgtggtcctgcaacccgccacccgcgacggcgcggacgtcctg
gtgcggttcttcaacgccgacggcaccgaggccggggcctgtggcaatgcctcgcgctgc
gtcgcggcgctgctgtggcggcaggaggggcggcgcgagacggtgctgcagacccgggcc
ggcctgctgcctgcccgggtggatgacgcgggcgtcgtcaccgtggacatgggccgcccg
gccctggactggcgcgacgtgccgctggcgcgggcggccgatacgctgcacctgccgctg
gcgggagacccggcggcggcctcgatgggcaatccgcacgccacgttcttcctggacgac
atgctggacctggacccggtcgtggccgggccgttgctggaacatgatccgctgtttccc
gaacgggccaatatcggcttcgcgcatgtccgctcgcgcaccgaactgcgcctgcgcgtg
tgggagcgcggcagcggcctgaccctggcctgcggctccggcgcctgtgcggcggtggtg
aacgccgtccggcgcgggctggtggaacggacctgcacggtcgggatggatggcggcgcg
ctgtccgtttcgtggcgcgcgcaggatgacccaggggaaggggggcatgtgctgatgacc
ggccccgccaccgtcagcttcgtcggcacgttcgatcccgaaggctatccgtcatga
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